Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1406 ATGGCGACCATGACGAGCTTGATCGGTCTCATCAACAAGATCCAACGCGCCTGCACGGTGCTCGGCGACCACGGCGGCGAGGGAATGTCGCTGTGGGAGGCGCTTCCCACCGTCGCGGTGGTTGGAGGACAGAGTTCAGGGAAATCTTCAGTGCTGGAAAGTGTTGTGGGGAGGGATTTTCTGCCACGTGGATCTGGTATTGTCACACGGAGGCCACTAGTGCTGCAACTTCACAAGACAGAAGATGGGAAACAGGAATATGCTGAGTTTCTTCATCAACCAAGGAAGAGATTCTCAGACTTTGCTGCTGTGAGACAAGAAATTTCAGATGAAACAGATCGTATAACTGGGAAAACAAAGGCAATTTCAAACGTTCCAATTCAACTCAGCATATATTCTCCACATGTTGTGAACTTAACCCTCATCGACCTTCCTGGATTGACAAAGGTTGCTGTAGAGGGACAATCAGAGTCTATCGTTCAAGATATTGAGAGCATGGTCCGCTCTTATATTGAGAAGCCCAATTGCATTATATTGGCCATCTCTCCTGCAAACCAAGATATTGCTACTTCAGATGCAATAAAAATTGCAAGAGAAGTTGATCCTTCAGGTGAAAGGACATTTGGGGTGTTGACAAAACTTGATCTTATGGACAAAGGAACTAATGCAGTTGAGGTTCTCGAAGGAAGACAATACAGGTTGCAGCATCCTTGGGTTGGAATTGTCAATCGTTCACAAGCTGATATTAATAAAAATGTTGACATGATTGTTGCTCGCAAGAAGGAGCGTGAATATTTCGAGAGTAGTCCCGAATATGGACATTTGGCACATAAAATGGGGGCAGAATATCTGGCCAGACTTCTATCCCAACATTTGGAGCTTGTTATTAGGCAGAAGATACCCAGTATCATTGCCTTAATAAAGAAAGCCATTGACGAGCTTAACGCAGAGCTAGACCGAATTGGCAGGCCAATAGCTGTGGATTCAGGGGCGAAGCTATACACAATTTTACAGATGTGTCGAGCATTTGACAAAGTATTTAAAGAACACCTGGATGGAGGCCGTCCTGGTGGGGACCGGATATATGGTGTTTTTGACCACCAATTACCAGCTGCTTTAAAAAAGCTCCCATTTAATCGTCATCTTTCCGTAAAGAATGTTGAACGAGTGGTTACAGAAGCGGATGGTTATCAGCCACATCTAATTGCTCCAGAGCAAGGCTACAGAAGACTTATTGAGGGATCTATCGGCTATTTCAAAGGCCCAGCGGAAGCCTCTGTGGATGCTGTCCACCTAATTCTGAAGGAGCTTGTTCGGAAGTCAATTGCAGAAACTGAGGAATTGAAGAGGTTTCCCACCCTTCAAGCTGATATAGCTGCTGCTGCAAACGATGCTTTGGAACGATTCCGTGAAGAAAGTAGGAGGACTGTGATCCGGATGGTCGATATGGAGTCTGGCTATCTAACAGTGGAATTTTTTCGGAAGATGCATCTTGAACCAGAAAAAAATTCAGATCCAAAGAACCCAAATCGAAGTACTCCTAATCCCAGTGTGGATACTCACTCAGATAGTCACCTCAGTAAAATTGGGTCAAATGTTAATGGTTATATCAACATGGTTTGTGATTCACTAAAACATTCTATTCCGAAAGCGGTGGTTCATTGTCAAGTTAGAGAGGCAAAGAGGTCATTGCTAAACCAATTTTATGTTCAAGTTGGGAAAAGGGAGAAGGATCAGTTGGGAGCGTTGTTGGATGAAGACCCTGCACTCATGGAAAAGAGATCACAACTAGCTAAAAGGCTTGAATTGTACAAGCAAGCTATGGATGATATTGATTCTGTGGCTTGGAAATAA 1854 0.4407 MATMTSLIGLINKIQRACTVLGDHGGEGMSLWEALPTVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGKQEYAEFLHQPRKRFSDFAAVRQEISDETDRITGKTKAISNVPIQLSIYSPHVVNLTLIDLPGLTKVAVEGQSESIVQDIESMVRSYIEKPNCIILAISPANQDIATSDAIKIAREVDPSGERTFGVLTKLDLMDKGTNAVEVLEGRQYRLQHPWVGIVNRSQADINKNVDMIVARKKEREYFESSPEYGHLAHKMGAEYLARLLSQHLELVIRQKIPSIIALIKKAIDELNAELDRIGRPIAVDSGAKLYTILQMCRAFDKVFKEHLDGGRPGGDRIYGVFDHQLPAALKKLPFNRHLSVKNVERVVTEADGYQPHLIAPEQGYRRLIEGSIGYFKGPAEASVDAVHLILKELVRKSIAETEELKRFPTLQADIAAAANDALERFREESRRTVIRMVDMESGYLTVEFFRKMHLEPEKNSDPKNPNRSTPNPSVDTHSDSHLSKIGSNVNGYINMVCDSLKHSIPKAVVHCQVREAKRSLLNQFYVQVGKREKDQLGALLDEDPALMEKRSQLAKRLELYKQAMDDIDSVAWK* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1406 617 Gene3D - 4 310 IPR027417 -
Vra11g1406 617 Pfam Dynamin central region 222 489 IPR000375 -
Vra11g1406 617 ProSiteProfiles GED domain profile. 526 617 IPR020850 -
Vra11g1406 617 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 32 301 IPR030381 GO:0005525
Vra11g1406 617 PRINTS Dynamin signature 35 53 IPR022812 -
Vra11g1406 617 PRINTS Dynamin signature 60 77 IPR022812 -
Vra11g1406 617 PRINTS Dynamin signature 133 150 IPR022812 -
Vra11g1406 617 PRINTS Dynamin signature 183 201 IPR022812 -
Vra11g1406 617 PRINTS Dynamin signature 202 218 IPR022812 -
Vra11g1406 617 PRINTS Dynamin signature 225 244 IPR022812 -
Vra11g1406 617 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 309 IPR027417 -
Vra11g1406 617 Pfam Dynamin family 38 213 IPR045063 -
Vra11g1406 617 PANTHER BNAA09G45430D PROTEIN 4 617 - -
Vra11g1406 617 SMART dynamin_3 4 252 IPR001401 GO:0003924|GO:0005525
Vra11g1406 617 MobiDBLite consensus disorder prediction 507 525 - -
Vra11g1406 617 Pfam Dynamin GTPase effector domain 522 614 IPR003130 GO:0003924|GO:0005525
Vra11g1406 617 SMART GED_2 521 614 IPR003130 GO:0003924|GO:0005525
Vra11g1406 617 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 61 70 IPR019762 -
Vra11g1406 617 Gene3D Dynamin, middle domain 332 594 - -
Vra11g1406 617 CDD DLP_1 35 301 IPR001401 GO:0003924|GO:0005525
Vra11g1406 617 PANTHER DYNAMIN 4 617 IPR022812 -
Vra11g1406 617 MobiDBLite consensus disorder prediction 499 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1406 Vra-Chr11 17030002 17043401 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1406 11 17030002 17043401 Vra11g1406 11 17030002 17043401 ECH