Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1404 ATGGCTCAGTCGCGTTCCGCCGGCGACGCATGCAAGGGTGGCACGGCGGAGTTCCCGGCGGGGCTAAGGGTTTTGGTCGTCGACGATGACGCCACCACGCTGAGGATTATAGAGCAAATGTCAATTCGATGCCGTTACCGCGTTACCACGTGCACTGAGGCTACTGTGGCTTTGAATCTTCTGCGGGAAAGGAAAGGTTGTTTTGATGTGGTACTGAGTGATGTTCATATGCCAGACATGGATGGCTATAAGCTCCTTGAACATGTTGGACTGGAAATGGACCTTCCTGTAATTATGATGTCTGGTGACAGTACAACAAGTGCTGTCATGAAGGGAATTAGACATGGGGCTTGTGATTATTTGATTAAGCCTGTACGTGAGGAAGAACTGAGGAATATATGGCAACATGTTGTTAGGAAAATCTGGAATGAAAATAAAGAACATGATAATTCTGGAAGCATGGAAGACAGTGATTGGAATAAACGGGGAAATGATGATACTGAATATACTTCTTCTGTTGCTGATGCAGCAGAAGTAGTTAAAGCACCAAAAAAGAGGAGCAGTTTAAAAGAAGAAGATATTGAATTGGAGAGTGATGATCCAGCCACATCTAAGAAGCCTCGTGTAGTGTGGTCAGTAGAACTGCACCAACAATTTGTTAGTGCTGTGAATCAACTTGGGCTTGATAAGGCTGTGCCGAAGAGAATACTTGAATTGATGAATGTCCCTGGTTTGACTAGAGAAAATGTTGCCAGTCATTTGCAGAAATTTAGACTTTACTTGAAGCGATTAAGTGGAGTGGCACAGCAACAGAATGGGATGCTAAATGCTGTTCCTGGGACTATAGAATCCAAGCTGAGCGCTACTGGAAGATTTGACATACAAGCTTTGGCTGCTGCTGGCCATGTTCCGCCTGAAACACTTGCAGCCCTTCATGCTGAGCTCTTAGGTCGCCCTGCAACTAGCATAATGTCTACAGCGGACCAGGCTACATTGCTGCAAGCATCCATTGGGCTAAAACATTCCCATGCTGAACATGCTGTGGCGTATGGTCAGCCTTTTGTAAAGTGTCCTTCCAACATTGGCAAGGATTTTCCTCCCTCTTTCTTAACTGCAAATGACGTATCGTCAGGATATGGTGCATGGCCATCATCTAATAATACAATGGGTTCAGTGAGACCCAATAATAGCGATGAAAGAGTGGGTACTCAGTATAACAACATGCTGATGGATATATTAGATCACCACCAACAAAGGCAGCAACCCCAGCAAAAACAACAGCAGCACCAGCAGCAAAAGCAACAACAACAGCCTTTGATACATGATCAAAGCTGTTCAATCAATGTTCAACCATCTTGCTTGGTGGTTCCATCTCAATCCTGTGACACTCTACAGAAATCAAATAATTCAGTTAGTGCCTCTCAATTTTCCGGTGGGGACACAAAAACTCAAGCTGTTCTGTATGCTCATACTACGCCCTCCACTTGTTCTATGAGCTCCATCAATGGCAGTATTCCGCAGCTTCAAAACTCAACTTTGACATTTGGTGGTGCAAGACCTTTGCCTAGCCCTTTGCCCATGTCTGATAGACAAGATCCCTATGGTTTGAAATCAGGTGATTCATTTGATCAAGTGTGCCTTAGGAATATTGGGTTTATTGGAAAAGGTACCTGTATTCCAAATAGGTTTGTTCAAAATGAAATTGAATCATCTGTCAGTGATTTTAGTCAAATGAAAGTCAATGTAGATAGCACTGGCAACACACTGAAGGAGGAGCCAAATTTTATAAATATGCAAAAAGTGAGTCGCCCAATCTTTGGAAGATATCAATCTTGTGATCATTCAAGTGTGTTTACTGAATAG 1863 0.4342 MAQSRSAGDACKGGTAEFPAGLRVLVVDDDATTLRIIEQMSIRCRYRVTTCTEATVALNLLRERKGCFDVVLSDVHMPDMDGYKLLEHVGLEMDLPVIMMSGDSTTSAVMKGIRHGACDYLIKPVREEELRNIWQHVVRKIWNENKEHDNSGSMEDSDWNKRGNDDTEYTSSVADAAEVVKAPKKRSSLKEEDIELESDDPATSKKPRVVWSVELHQQFVSAVNQLGLDKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRLSGVAQQQNGMLNAVPGTIESKLSATGRFDIQALAAAGHVPPETLAALHAELLGRPATSIMSTADQATLLQASIGLKHSHAEHAVAYGQPFVKCPSNIGKDFPPSFLTANDVSSGYGAWPSSNNTMGSVRPNNSDERVGTQYNNMLMDILDHHQQRQQPQQKQQQHQQQKQQQQPLIHDQSCSINVQPSCLVVPSQSCDTLQKSNNSVSASQFSGGDTKTQAVLYAHTTPSTCSMSSINGSIPQLQNSTLTFGGARPLPSPLPMSDRQDPYGLKSGDSFDQVCLRNIGFIGKGTCIPNRFVQNEIESSVSDFSQMKVNVDSTGNTLKEEPNFINMQKVSRPIFGRYQSCDHSSVFTE* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1404 620 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 469 IPR045279 GO:0009736
Vra11g1404 620 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 262 IPR017930 -
Vra11g1404 620 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 206 259 IPR006447 GO:0003677
Vra11g1404 620 MobiDBLite consensus disorder prediction 147 202 - -
Vra11g1404 620 MobiDBLite consensus disorder prediction 179 202 - -
Vra11g1404 620 MobiDBLite consensus disorder prediction 147 165 - -
Vra11g1404 620 MobiDBLite consensus disorder prediction 381 401 - -
Vra11g1404 620 CDD REC_typeB_ARR-like 24 138 - -
Vra11g1404 620 MobiDBLite consensus disorder prediction 416 439 - -
Vra11g1404 620 Pfam Response regulator receiver domain 24 133 IPR001789 GO:0000160
Vra11g1404 620 ProSiteProfiles Response regulatory domain profile. 23 138 IPR001789 GO:0000160
Vra11g1404 620 PIRSF RR_ARR_type-B 1 615 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vra11g1404 620 SMART REC_2 22 134 IPR001789 GO:0000160
Vra11g1404 620 Pfam Myb-like DNA-binding domain 208 256 IPR001005 -
Vra11g1404 620 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 18 469 - -
Vra11g1404 620 SUPERFAMILY CheY-like 21 145 IPR011006 -
Vra11g1404 620 SUPERFAMILY Homeodomain-like 203 263 IPR009057 -
Vra11g1404 620 Gene3D - 202 265 - -
Vra11g1404 620 Gene3D - 22 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1404 Vra-Chr11 17020135 17027339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1404 56 320 Response Regulator Gene Family AT3G16857 54.671 1.84e-91 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vra11g1404 Response_reg 1.6e-21 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1404 11 17020135 17027339 Vra11g1404 11 17020135 17027339 ECH