Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1394 ATGGTGTCAAAATCCTATTCAAACCTATTGGAGTTGGCCTCGGGAGAGGCTCCTTCCTTTGGGTACATGAACAGGAGAATTCCTAGAATTATGACCGTGGCTGGGTTGATATCAGATGTTGATGACGACCCAGTGGATAGTGTGTGCTCTGATCCGTCGTCATCGGCGGCGCACCGTGACCGGATAATCATGGTGGCTAATCAGCTTCCCATAAGGGCTCAGAGGAGGCCAGATGGTAATAGGAGTTGTTGGTGTTTTGAGTGGGATGAGAATGCCCTTCTTCAGCTGAAAGATGGGTTAGGGGATGATGATATAGAGGTTATTTACGTTGGATGTCTTAAGGAGGAGGTGCATCCAAGTGAACAAGATGAGGTTTCACAGACACTTCTTGAGACCTTCAAGTGTGTCCCAACTTTTCTTCCGGCTGACCAGTTCACCAAGTTCTATCATGGTTTCTGCAAGCAGCAGCTTTGGCCACTGTTCCATTACATGTTGCCTTTGTCACCAGAACTTGGTGGGAGGTTTAACAGGTCACTGTGGCAGGCTTATGTATCAGTCAATAAAATTTTTGCAGATAGGATCATGGAAGTTATCAACCCTGAAGATGACTATGTGTGGATACATGATTATCATCTGATGGTGTTGCCAACTTTCTTGAGGAAGAGGTTCAACAGGGTGAAATTGGGGTTCTTCCTTCACAGCCCTTTCCCTTCATCAGAGATATACAAGACATTGCCTGTTAGGGAGGAGATCTTGAGAGCCCTCCTTAATTCGGATTTGATAGGCTTCCACACTTTTGATTATGCTCGCCATTTCCTCTCCTGTTGCAGCCGGATGCTAGGCCTTACCTACGAATCAAAGAGAGGTTATATCGGGATTGAATACTATGGTAGGACTGTTAGTATCAAAATTCTTCCTGTTGGCATTCACATGGGTCAGCTTCAATCTGTTTTGAAGATGCCTCAGACTGAGGATAAAGTTTGTGAGCTCATCAAACAGTTTTCTGATCAAGGAAGGACATTGTTGCTTGGGGTGGATGACATGGATATTTTCAAGGGAATAAGTTTGAAGCTATTGGCCATGGAGCAACTTCTCATTCAGCACCCTGAGTATCAGGGAAAGGTAGTGCTAGTGCAGATAGCCAATCCTGCTAGGGGACGGGGCAAGGATGTGAAAGAAGTGCAGGCAGAGACAAAGGCCACAGTGAAACGTATTAATGAAACATTTGGGAAACCAGGGTATGATCCCGTGATTCTGATAGAGGAGCCTCTCAAGTTTTATGAGAGAGTGGCATACTATGTTGTTGCAGAGTGTTGTTTAGTAACTGCAGTAAGGGATGGAATGAATCTCATACCGTATGAATATATCATCAGTCGTCAGGGAAATGAAATGTTGGATAAAGTTTTGGGTCTAGCTTCCTCTCCTAAGAAGAAAAGCATGCTGGTTGTGTCTGAATTCATTGGCTGTTCCCCATCTTTGAGTGGAGCAATCAGAGTGAACCCGTGGAACATTGATGCAGTAGCCGATGCAATGGAATCTGCTCTTGAAATGGCTGATTCAGAGAAGGAGCTTAGGCATGAGAAGCATTATAGATATGTTAGTACTCATGATGTTGGGTACTGGGCAAGAAGCTTCTTGCAAGATTTGGAAAGGACTTGTCGTGATCATGTGAGACGAAGGTGGTGGGGTATTGGGTTTGGATTAAGCTTTAGAGTTGTTGCACTTGATCCAAACTTCAAGAAGCTCTCAATGGAGCACATAGTTTCAGCATACAAGAGGACAACAACTAGAGCAATCCTTCTTGATTATGATGGTACACTGATGCCTCAATCATCAACAATTGATAAGAGTCCAAGCAGTAAATCCATTGAAATCCTTAGTAGTTTGTGTAGAGATAAGAACAACATGGTTTTCCTTGTTAGTGCTAGAAGCCGAAAGATGCTTTCAGAATGGTTTTCTTCTTGTGAGAATCTGGGAGTTGCAGCTGAGCACGGTTACTTTATTAGAATGAGGCGAGATGAAGAGTGGGAAACACATGTTGCGGCAACAGATTGTAGTTGGAAACAGATTGCAGAACCTGTGATGAAACTTTATACTGAAACAACTGATGGATCCACCATTGAAGACAAGGAGACTGCACTTGTATGGTGCTATGAGGATGCAGATCCAGACTTTGGATCATGCCAAGCTAAGGAGCTTCTTGATCACCTTGAGAGTGTGCTTGCAAATGAACCTGTAACAGTCAAGAGTGGCCAGAATAATGTAGAGGTTAAACCACAGGGTGTGAGCAAGGGACTAGTGGCCAAACGCCTACTTTCTGCCATGCAAGAAAAGGGAATGTACCCTGATTTTGTTCTGTGCATAGGAGATGACAGGTCTGATGAAGACATGTTTGAGGTGATCACCAGCTCGATGGGCGGGCCGATCGCCCCACGGGCCGAAGTTTTCGCCTGCACCGTATGCCGAAAACCCAGTAAGGCTAAGTACTATCTGGATGACACAACTGAAATAGTGAGATTGCTCCAAGGCTTAGCCTGTGTTTCAGAGCAAGTAGTTTCATTTTCTTCAGAGCAAATAGTTTGTTAA 2586 0.4439 MVSKSYSNLLELASGEAPSFGYMNRRIPRIMTVAGLISDVDDDPVDSVCSDPSSSAAHRDRIIMVANQLPIRAQRRPDGNRSCWCFEWDENALLQLKDGLGDDDIEVIYVGCLKEEVHPSEQDEVSQTLLETFKCVPTFLPADQFTKFYHGFCKQQLWPLFHYMLPLSPELGGRFNRSLWQAYVSVNKIFADRIMEVINPEDDYVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYKTLPVREEILRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRGYIGIEYYGRTVSIKILPVGIHMGQLQSVLKMPQTEDKVCELIKQFSDQGRTLLLGVDDMDIFKGISLKLLAMEQLLIQHPEYQGKVVLVQIANPARGRGKDVKEVQAETKATVKRINETFGKPGYDPVILIEEPLKFYERVAYYVVAECCLVTAVRDGMNLIPYEYIISRQGNEMLDKVLGLASSPKKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVADAMESALEMADSEKELRHEKHYRYVSTHDVGYWARSFLQDLERTCRDHVRRRWWGIGFGLSFRVVALDPNFKKLSMEHIVSAYKRTTTRAILLDYDGTLMPQSSTIDKSPSSKSIEILSSLCRDKNNMVFLVSARSRKMLSEWFSSCENLGVAAEHGYFIRMRRDEEWETHVAATDCSWKQIAEPVMKLYTETTDGSTIEDKETALVWCYEDADPDFGSCQAKELLDHLESVLANEPVTVKSGQNNVEVKPQGVSKGLVAKRLLSAMQEKGMYPDFVLCIGDDRSDEDMFEVITSSMGGPIAPRAEVFACTVCRKPSKAKYYLDDTTEIVRLLQGLACVSEQVVSFSSEQIVC* 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1394 861 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 599 801 IPR006379 -
Vra11g1394 861 Gene3D - 596 725 IPR023214 -
Vra11g1394 861 Gene3D - 726 857 IPR023214 -
Vra11g1394 861 Gene3D Glycogen Phosphorylase B; 53 316 - -
Vra11g1394 861 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 553 - -
Vra11g1394 861 Pfam Trehalose-phosphatase 600 834 IPR003337 GO:0003824|GO:0005992
Vra11g1394 861 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 6 1 851 - -
Vra11g1394 861 SUPERFAMILY HAD-like 597 845 IPR036412 -
Vra11g1394 861 Gene3D Glycogen Phosphorylase B; 317 534 - -
Vra11g1394 861 Pfam Glycosyltransferase family 20 61 550 IPR001830 GO:0003824|GO:0005992
Vra11g1394 861 CDD GT20_TPS 61 550 IPR001830 GO:0003824|GO:0005992
Vra11g1394 861 CDD HAD_TPP 598 839 - -
Vra11g1394 861 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 851 IPR001830 GO:0003824|GO:0005992
Vra11g1394 861 TIGRFAM T6PP: trehalose-phosphatase 596 844 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1394 Vra-Chr11 16919602 16923819 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1394 1 852 Trehalose Biosynthesis Gene Families AT1G68020 80.600 0.0 1449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1394 11 16919602 16923819 Vra11g1394 11 16919602 16923819 ECH