Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1388 ATGCCTTCCTTCATACTCATCTTCTTCTTCTTCCTCTTCAATCTTCAATCCTCTTTCTCCCAACAGCAATTCTCATCCTTCAACATCTCAAACTCCCCATGGCAACCATCTCAGAACAGAACCCTTATCTCTCCCAACAAAAACTTCTCTGCAGGCTTCTTTCCCGTCCCAAACTCCAACCTTTTCATCTTTTCCATTTGGTATTCTAAAGTTCCTGTCGACCCTCTTGTGTGGAGTGACACCATCCGAGTGAACAGTTCTGGCTCCCTTGCCATCACCTCAAAATTTGAACTTCTCCTCGATGGTTCGCCCTTTCAAGGAACTGCCGACACTAATGCTTCCCGACTTGATCTGAAGGACAATGGAGAGTTGGTTTTTGGGAATTGGAGCAGCTTCAAGAACCCCTCCAACACCGTTTTGCCCAACCAGAGCTTCACAGGGATTGAACTTCTCTCCAAAAATGGGAAATTCAGGTTCACCAAGTCTCAGTTTCTAGTCCTCAACTTCACCTCTGACCAGTACTATAGCACCCCAAATCCCTTGCTGAGCATGGATGATGCAGGGAAAATGAGTATGCAAGGTAACTCTTTTCTCACTTCAGATTACGGAGACCCCAGGTTCAGGAAAGTGGTCCTTGATGATGATGGGAATCTCAGGATCTATAGCTTCTATCCCGACCAGAATAACCAGTGGCTTGAGGTTTGGAAAGGGTTATGGGAGATGTGCAAGATCAAAGGCAAATGTGGGTCAAATGCAATTTGTGTGCCTGGAGAGGATTTGAACTCTTCTACTCATTGTGATTGCCCATCTGGGTTCACCCCAAACAAAGGCGGGGCTGAAGAGGGTTGCACAAGGAAAATCTCTCTCTCCCAAAGCATCCAATTTGTGAGGCTGGACTATGTGAACTTCACCAGTGATGGTAATCTGACCCAGATTAAAGCTGACAACTTCACCATCTGTGAGTCCGGTTGCTCAAGAGATAAAACTTGTCTTGGGTTTGGGTTCAAATATGATGGATTGGGTTACTGTGTGTGGGTGACTGGGACAAATCTTCGATTTGGGTACTGGTCACCAGGCACCGAGGCTGCCTTTTTTCTCAAAGTTGATAAATCTGAATCAACACCATCCAACTTCATTGGCCTGACTGAGGTGATGCAAACCACATGCCCAGTGAACATAAGCCTGCCACTGCCCCCAAAGGACTCAAACACAACAGCCAGAAACATTGCCATAATATGCACACTTTTTGCTGCAGAACTCATAGCTGGGGTGGCCTTTTTCTGGTCCTTCCTGAAGAGGTACATCAAGTATAGGGACATGGCCACCACACTAGGCCTGGAGCTTCTCCCTGCTGGGGGTCCCAAGAGGTTCACCTACTCAGAAATCAAGGCTGCAACCAATGACTTCTCCAATCTCATAGGCAAAGGAGGCTTTGGAGATGTCTACAAAGGTGAGTTGCCAGACCACAGGGTGGTGGCAGTGAAGTGCCTCAAGAATGTGACAGGTGGAGATGCTGAGTTCTGGGCAGAAGTCACAATCATTGCCAGAATGCACCATCTCAACTTGGTGAGGCTGTGGGGGTTCTGTGCTGAGAAGGGGCAAAGGATACTAGTCTATGAACACATCCCCTGTGGCTCATTGGACAAGTACCTCTTCAGGGTGAACAAGTCTCACAGCAATAATAACAACCATCTTAAAGATCAATCAAGTCCAAACACAGCACAGCAGAAGCCGGTTTTGGATTGGAGCATGAGGTACAGAATAGCTCTTGGTGTGGCAAGGGCTATTGCATACTTGCATGAGGAGTGTTTGGAGTGGGTTTTGCACTGTGACATAAAGCCTGAGAACATCTTACTAGGTGATGATTTTTGCCCCAAGATATCAGATTTTGGGCTGGCCAAGTTGAGGAAAAAGGAGGACATGGTGACGATGTCAAGGAGGAGAGGCACACCAGGGTACATGGCACCTGAATGGATCACAGCTGACCCAATCACTTCAAAAGCTGATGTGTATAGTTTTGGTATGGTGCTTTTGGAGCTTGTGAGTGGAATTAGGAACTTTGAGATTCAAGAATCTGTGCTTAGGAGTGAGGAGTGGTACTTCCCAGGTTGGGCCTTTGACAAGATGTTTAAGGAGATGAGAGTGGAGGAGATTTTGGATGCACAGATTAGGAATGCTTATGATAGCAGAAGCCACTTTGACATGGTTAATAGGATGGTGAAAACTGCCATGTGGTGTCTTCAAGATAGGCCTGAGTTGAGGCCTACCATGGGCAAGGTGGCCAAGATGTTGGAAGGAACTGTGGAGATCCTTGAGCCCAAGAAGCCCACCGTTTTCTTCCTTGGAGAAGAGTAG 2355 0.4696 MPSFILIFFFFLFNLQSSFSQQQFSSFNISNSPWQPSQNRTLISPNKNFSAGFFPVPNSNLFIFSIWYSKVPVDPLVWSDTIRVNSSGSLAITSKFELLLDGSPFQGTADTNASRLDLKDNGELVFGNWSSFKNPSNTVLPNQSFTGIELLSKNGKFRFTKSQFLVLNFTSDQYYSTPNPLLSMDDAGKMSMQGNSFLTSDYGDPRFRKVVLDDDGNLRIYSFYPDQNNQWLEVWKGLWEMCKIKGKCGSNAICVPGEDLNSSTHCDCPSGFTPNKGGAEEGCTRKISLSQSIQFVRLDYVNFTSDGNLTQIKADNFTICESGCSRDKTCLGFGFKYDGLGYCVWVTGTNLRFGYWSPGTEAAFFLKVDKSESTPSNFIGLTEVMQTTCPVNISLPLPPKDSNTTARNIAIICTLFAAELIAGVAFFWSFLKRYIKYRDMATTLGLELLPAGGPKRFTYSEIKAATNDFSNLIGKGGFGDVYKGELPDHRVVAVKCLKNVTGGDAEFWAEVTIIARMHHLNLVRLWGFCAEKGQRILVYEHIPCGSLDKYLFRVNKSHSNNNNHLKDQSSPNTAQQKPVLDWSMRYRIALGVARAIAYLHEECLEWVLHCDIKPENILLGDDFCPKISDFGLAKLRKKEDMVTMSRRRGTPGYMAPEWITADPITSKADVYSFGMVLLELVSGIRNFEIQESVLRSEEWYFPGWAFDKMFKEMRVEEILDAQIRNAYDSRSHFDMVNRMVKTAMWCLQDRPELRPTMGKVAKMLEGTVEILEPKKPTVFFLGEE* 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1388 784 SMART serkin_6 467 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g1388 784 Pfam Protein kinase domain 471 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g1388 784 PANTHER OS10G0101000 PROTEIN 5 784 - -
Vra11g1388 784 ProSitePatterns Protein kinases ATP-binding region signature. 473 495 IPR017441 GO:0005524
Vra11g1388 784 ProSiteProfiles PAN/Apple domain profile. 283 369 IPR003609 -
Vra11g1388 784 ProSiteProfiles Protein kinase domain profile. 467 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g1388 784 SUPERFAMILY Protein kinase-like (PK-like) 450 765 IPR011009 -
Vra11g1388 784 PIRSF SRK 1 784 IPR024171 GO:0004674
Vra11g1388 784 Gene3D Phosphorylase Kinase; domain 1 441 541 - -
Vra11g1388 784 Gene3D Transferase(Phosphotransferase) domain 1 545 775 - -
Vra11g1388 784 CDD EGF 242 276 - -
Vra11g1388 784 ProSitePatterns Serine/Threonine protein kinases active-site signature. 607 619 IPR008271 GO:0004672|GO:0006468
Vra11g1388 784 Pfam S-locus glycoprotein domain 203 275 IPR000858 GO:0048544
Vra11g1388 784 PANTHER OS07G0415500 PROTEIN 5 784 - -
Vra11g1388 784 CDD STKc_IRAK 473 766 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1388 Vra-Chr11 16859911 16862791 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1388 382 776 Receptor kinase-like Gene Family AT4G18250 36.829 7.15e-76 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vra11g1388 Pkinase 1e-44 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1388 11 16859911 16862791 Vra11g1388 11 16859911 16862791 ECH