Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1387 ATGGGTTTTGTTTCGTGGCTTGCTGTCTTGTTGTTCTGTGTGGGGTTTGAGTGTGCGTGGTGTCAAGATGATGTTGTGATGAACAAATTGAAGAAGGCCATCAATGGACCCAGTGGTCTTCAATGGAATGACCCAGATGTCTGTAAATGGGAACACGTTAAGTGCAGTGCCACGAAGAGGGTTACTGCAATTCAAATTGGGGGACAGAGTTTGCAAGGTTCTCTGCCTAAGGAACTGGCGCAGCTCTCAGAGTTGACACGATTTGAGTGCATGAGCAATGACTTAACTGGGCCATTTCCTAACATGCCAAAGTCCCTTGAGGTTCTGCTCATCCACAACAACAATTTCCAGTCCTTACCGGGTGATTTCTTCACCGGCATGACCAATTTGCAGTATGTGAGCATTGGCTACAACCCTTTTTCCCAGTGGGGGATTCCTGATAGCCTCAAGGACTGTGTGGCTCTCAGGAGTTTCTCTGCAACCAGTGCCGGTTTGGTGGGGAAAATCCCAGATTTTTTTGGTAAAGATGGTCCCTTCCCAGGTTTGGTTTCTCTTATCTTGAGTTTTAATTCTCTTGAAGGAGCATTGCCTGCAACCTTTTCTGGGAGTTCTTTGGAGACACTTTGGGTGAATGGTCAGAAAAGTGATGGTAAACTCAATGGTACCCTTGATGTGTTAAAGAGCATGACATATTTGAAACAAATTTGGGTGCACGGTAACTCGTTCACAGGTCCTATACCGGACTTCTCGAATCATGATCAACTATATGATGTGAGCTTGAGGGATAATCAGTTAACTGGGGTTGTTCCATCCTCTCTCAAAGCTCTCCCTTCTCTTAAAGTGGTGAATTTGACCAATAACTTACTTCAAGGGTCTCCTCCCTTGTTCAAAGATGGAGTGAAGGTTGATAATGATTTAGACAAGGGGATCAATAGTTTTTGCACAGTGGAGGCTGGTAAGCCATGCAGTCCTCTTGTGGATGCTTTACTTTCTGTTGTTGAACCTTTTGGATACCCTCTGAGACTGGCTGAAAGTTGGAAGGGGAATGACCCTTGTGGTCAAAGATGGTTGGGGATTGTTTGCTCAAATGGTAACGTTTCCGTCATCAACTTGCAGAGCATGAATCTCTCTGGCAACATTTCTCCCAGTTTTGCTTCGCTTACATCTGTGACAAAGCTGCTTCTTCCCAACAATGCCCTCACTGGTACCATACCAAGTGAACTCACCCGCATGCCTGGTCTGGTAGAATTGGATGTTTCCAATAATCAATTGCACGGCAAGGTGCCATCTTTTCGTGAGGGTGTAGTTGTTAAAACTGGTGGGAATCCTGATATTGGAAAGGATAAGCCTCAGGCCCCGCCTGGCTCAAATCCTCAGGGTAAATCTGGAGGTCAAGTTAAGAAAAATAATACTGGAGCAATTATTGGCTCTGTGTTGGGAGGTATCAGTTTAATTGGTTTGGTGGCTTTTATATTTCTTATCTATGGTAGAAAACGTAAGCAAGCAGGCAAAGTTCAAGGTCCTAGTGCAATAGTGGTACATCCTCGTTATTCTGGGGATGCAAATACTCTGAAGATAAGTGTTGCAGATGCTAGTGCTGGTGTTAGTGGTGGTGGTAGTGGTGTAGGAGGAATCGGTGCACTTAGTCCAGCTAGTACTGTTCAACATGTGGAATCTGGGAATATGGTTATTTCAATCCAAGTTTTGAGACAAGTTACGAACAATTTCAGTGAGGCAAACATATTGGGGAGAGGTGGTTTTGGCACTGTATACAAAGGGGAATTGTACGATGGAACAAAAATTGCAGTTAAAAGGATGGAATGTGGAATGATGGTCGAGAAGGGGCTCACTGAGTTTGAGTCTGAAATTGCAGTACTGACTAAGGTTCGACACAGACATCTGGTTGCACTGGAAGGCCACTGCTTGGATGGAAATGAGAAGCTTCTTGTGTATGAATACATGCCTCAGGGTCCTCTCAGTAAGCATCTATTTGACTGGAAAGAGCAAGGAATACAACCATTGGAATGGAAGAGAAGGCTTTCCATTGCCTTGGATGTTGCCAGAGGTGTTGAATATCTTCACGGTTTGGCCCAGCAAATTTTTATCCATAGGGATCTAAAACCATCAAACATCTTGCTTGGGGATGATATGCGGGCCAAAGTCTCAGACTTTGGATTGGTTCGGCTTGCTCCAGAAGGACAGACCTCATTTGAAACCAGGCTTGCTGGAACTTTTGGATATTTGGCTCCAGAGTATGCAGTCACTGGACGAGTTACAACAAAGGTTGATGTTTACAGCTATGGAGTGATTCTGATGGAGATGATAACAGGAAGAAAAGCAATTGACAACAGCCAACCAGAAGAGAATGTCCACCTTGTTACATGGTTCAGGAGGATGCTACTGAACAAAGACTCTTTTGAGAAGATTATTGACCCCATAATGTGTATTGATGAGGAGGCCCTACCCAGCTGTAGGACTGTGGCTGAGTTGGCTGGCCACTGTTGTGCAAGGGAGCCTTACCAGCGTCCAGACATGAGCCATGTGGTGAATGTGTTGGCTCCTCTTGTTGAGATTTGGAAGCCTTCTGAGACAGATGATGAAGAGCTTTATGGAATTGACTTGGACATGACCTTGCCTCAAGCACTCAGAAAATGGCAGGCTGTTGAAGGAAGGAACACCTTTGATACTTCTTCATCAATGCTTACCAGTGAAGAAAATACACAATCTAGCATACCAACAAGGCCATTTGGATTTGCTAATTCTTTTAATTCCTCTGATGGAAGATGA 2787 0.4453 MGFVSWLAVLLFCVGFECAWCQDDVVMNKLKKAINGPSGLQWNDPDVCKWEHVKCSATKRVTAIQIGGQSLQGSLPKELAQLSELTRFECMSNDLTGPFPNMPKSLEVLLIHNNNFQSLPGDFFTGMTNLQYVSIGYNPFSQWGIPDSLKDCVALRSFSATSAGLVGKIPDFFGKDGPFPGLVSLILSFNSLEGALPATFSGSSLETLWVNGQKSDGKLNGTLDVLKSMTYLKQIWVHGNSFTGPIPDFSNHDQLYDVSLRDNQLTGVVPSSLKALPSLKVVNLTNNLLQGSPPLFKDGVKVDNDLDKGINSFCTVEAGKPCSPLVDALLSVVEPFGYPLRLAESWKGNDPCGQRWLGIVCSNGNVSVINLQSMNLSGNISPSFASLTSVTKLLLPNNALTGTIPSELTRMPGLVELDVSNNQLHGKVPSFREGVVVKTGGNPDIGKDKPQAPPGSNPQGKSGGQVKKNNTGAIIGSVLGGISLIGLVAFIFLIYGRKRKQAGKVQGPSAIVVHPRYSGDANTLKISVADASAGVSGGGSGVGGIGALSPASTVQHVESGNMVISIQVLRQVTNNFSEANILGRGGFGTVYKGELYDGTKIAVKRMECGMMVEKGLTEFESEIAVLTKVRHRHLVALEGHCLDGNEKLLVYEYMPQGPLSKHLFDWKEQGIQPLEWKRRLSIALDVARGVEYLHGLAQQIFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGQTSFETRLAGTFGYLAPEYAVTGRVTTKVDVYSYGVILMEMITGRKAIDNSQPEENVHLVTWFRRMLLNKDSFEKIIDPIMCIDEEALPSCRTVAELAGHCCAREPYQRPDMSHVVNVLAPLVEIWKPSETDDEELYGIDLDMTLPQALRKWQAVEGRNTFDTSSSMLTSEENTQSSIPTRPFGFANSFNSSDGR* 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1387 928 SMART LRR_typ_2 411 434 IPR003591 -
Vra11g1387 928 SMART LRR_typ_2 179 202 IPR003591 -
Vra11g1387 928 SMART LRR_typ_2 276 298 IPR003591 -
Vra11g1387 928 SMART LRR_typ_2 104 126 IPR003591 -
Vra11g1387 928 SUPERFAMILY Protein kinase-like (PK-like) 554 861 IPR011009 -
Vra11g1387 928 SUPERFAMILY L domain-like 26 429 - -
Vra11g1387 928 MobiDBLite consensus disorder prediction 439 466 - -
Vra11g1387 928 MobiDBLite consensus disorder prediction 896 928 - -
Vra11g1387 928 PANTHER OSJNBA0070M12.3 PROTEIN 8 928 - -
Vra11g1387 928 Gene3D Transferase(Phosphotransferase) domain 1 654 871 - -
Vra11g1387 928 CDD STKc_IRAK 582 855 - -
Vra11g1387 928 Pfam Leucine rich repeat N-terminal domain 327 362 IPR013210 -
Vra11g1387 928 Pfam Leucine rich repeat N-terminal domain 28 56 IPR013210 -
Vra11g1387 928 Gene3D Ribonuclease Inhibitor 325 449 IPR032675 -
Vra11g1387 928 ProSitePatterns Protein kinases ATP-binding region signature. 582 604 IPR017441 GO:0005524
Vra11g1387 928 Pfam Protein tyrosine and serine/threonine kinase 580 851 IPR001245 GO:0004672|GO:0006468
Vra11g1387 928 ProSitePatterns Serine/Threonine protein kinases active-site signature. 701 713 IPR008271 GO:0004672|GO:0006468
Vra11g1387 928 Gene3D Phosphorylase Kinase; domain 1 547 653 - -
Vra11g1387 928 ProSiteProfiles Protein kinase domain profile. 576 856 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g1387 928 Pfam Leucine rich repeat 105 158 IPR001611 GO:0005515
Vra11g1387 928 SMART serkin_6 576 856 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g1387 928 PANTHER TRANSFERASE, PROTEIN KINASE RLK-PELLE-LRR-IX FAMILY-RELATED 8 928 - -
Vra11g1387 928 Gene3D Ribonuclease Inhibitor 22 320 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1387 Vra-Chr11 16851969 16856768 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1387 56 856 Receptor kinase-like Gene Family AT5G62230 28.181 1.57e-76 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vra11g1387 PK_Tyr_Ser-Thr 9.7e-46 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1387 11 16851969 16856768 Vra11g1387 11 16851969 16856768 ECH