Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1379 ATGATGATGATGATGATGACGCCAAACTTGAACCTGGAACCTGAAGAAGATTTCAAAATCTGCAGCCAAGTTGGATCAAATGAATTGCTGCAAGAAACAGCACAAGATTATTTGGACAACAGCAGCTCCTCCTGTCTCACAAAGACTGATCCTGATTCAGGTTCTCTGTCCCTTGACTTGACCCTCAAATTCAATCACAGTGATGAAGAGTTCAAAGGTGAAAGTCACACCAACAGTGAAGTAGGAGGTGAAACTCATCCCTCAGCACTAGCAGTTCCCAGAGTTTTCTCCTGTAACTATTGCCGGAGGAAATTCTTCAGCTCGCAGGCATTAGGTGGCCATCAGAATGCTCACAAAAGGGAGAGGACAATGGCAAAGCGTGCACTGAGAATGGGGATTCTCACTGAAAGGTACACAAGCTTAGCATCTCTGCCTCTGCATGGTTCTTCTTGTCGTTCACTTGGCCTTGAAGCTCATGCTTCAATACACCAAGGACAAGTGCAGTCAGTGAGGGTTCCTGAAATAGGAGTTGGTGCAAAATTCGAAAAAGACTATTTTCGGACACCGATCTTCGTGGAAGATGATGATGATGGTCTGTTTTGGCCTGGCAGCTTCAGAAAGACAGAAGGAAGGGGTGGTTTTGGTGTTAATCTGAGGCATGATGCAGATGCTTTCAATTCAAGTACTAGGTTTGTAGCAACTGCAGCTCCGGCACAAACATCTGCAACTCCTGATCTCACTCTGAGGCTCTGA 753 0.4568 MMMMMMTPNLNLEPEEDFKICSQVGSNELLQETAQDYLDNSSSSCLTKTDPDSGSLSLDLTLKFNHSDEEFKGESHTNSEVGGETHPSALAVPRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRALRMGILTERYTSLASLPLHGSSCRSLGLEAHASIHQGQVQSVRVPEIGVGAKFEKDYFRTPIFVEDDDDGLFWPGSFRKTEGRGGFGVNLRHDADAFNSSTRFVATAAPAQTSATPDLTLRL* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1379 250 Gene3D Classic Zinc Finger 84 143 - -
Vra11g1379 250 PANTHER ZINC FINGER PROTEIN 3-RELATED 2 250 - -
Vra11g1379 250 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Vra11g1379 250 SUPERFAMILY beta-beta-alpha zinc fingers 94 124 IPR036236 -
Vra11g1379 250 PANTHER ZINC FINGER PROTEIN JAGGED 2 250 IPR045320 GO:0003700
Vra11g1379 250 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 123 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1379 Vra-Chr11 16767230 16770349 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1379 94 250 C2H2 Transcription Factor Family AT1G66140 43.646 1.83e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra11g1379 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1379 11 16767230 16770349 Vra11g1379 11 16767230 16770349 ECH