Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1378 ATGATTGGAGGCAAAGATCTTGTTCCCAATGGCGTGGACACCGAGGGAGAGAACTCAAGGAGCAAGGTGCAGCAGCATCAGCATCGTGATTTTTCTCAGGGCAAGGAACGCCCACAAGAGAAAAAGCAAAGTTACCCGGAGAAGAAGAAGGTTGGTGTTGATGAGTTTCAGTCACCACCCTCAAAATTTGTCTCTTCCGGGTCGCAAGAGTTGACCCTCAGCTACCTCTGTGACAACAGAAAATTGAGTCTTGTCGAGAGAGAGGTTGACGGCAGAAGCTCGGTGAAGGGCAAAGAAGTTGTGGTTTATGGGAATTCAGATCAAGATCAAGACGAGTTAAGGTTTAAATCGTCTCTGGAAGAGGTGACAGCATTTAGTGCGCGACAATACTTCGACCAGGATTGTCTCCGGAGGAAGGTGGCTGTGGGGAACCAAAAGCAAGATCAGGATGAGAAATGGGTGGAGAGGGATTTCTTGAGTTTGAGTGAGTCAAGGGAGAATTCTTCGAAGAGATCCATTGATGAAGAGTGTGAGAGGGAGAGGAGTGGTGGCAGCAAGAAGCAGAAGCTTGAGACTCTCAGTCTCTCTCTTGCTTTGCCTGATGTGTCGCTCTCTCTCACAGCTTCAAACGCTTTGCAAAATGGTGACCAACTTGTTAAGCCAAAGCCTGGTATGCCATCCACAAGGCCCACAACTACCATCAATTCATGTTCAAATGATTACACTGCAGCTTCTATGTCTCAATCTTACTCTCACCCTTTCTCACACAACCCAAGTTGCTCAATCACCCGAAATTCAACCGACAATTTTGAGTATTCCCACAGCAAAGATGATCAAATTTGGCATTGTGGGGAGGGCACTAATGGGTCAGTTCATAGCAGGTTCAAGCCAATAGGAGATGGGGTTGCTTTGGCCAATTATTCCTTTATGCAAGGGAACAGTCACTATAAGGCTACTAGCTCGGATAACCAATCTTTTTTCCCTTCAGAATTGCCTGCAAGAGTGAGGTTTGAAGCTCAGTCTGAGGGCTCCAGGGGAAAGAATTCTGAGAATCTGAGAGGCTTGGAAGGTGTGGATGGTGGGAAAATGATGAAGTTTCCTAGATCAGAGAGAATTCTAAGAGAAATTGTGTCTGAGTCTATCCCAACCATGGCTTTGCAATTTCAGGAGTTCACTGATGAAGTCATAACTTCAATTAAGGAACACTTGAAAGGTCTCATTGATACACCAGAGAAGAAAGGGGAATTGATGAACCTCCAGAATCGGCTTGGCCGAAGATCTGACCTCACCAGAGAGACTCTTTCCAAGTGTCATAAAGTGCAGCTAGAGATTTTGACTGCTATCAAGATGGGGCTTGCGAGTTTCTTGTCTGGTAAGTTCCAAATCTTGGAGATGGTGGAGGTTTTCTTGTATATGAGATGTAGAAATGTGAACTGCAAGAGCTTGCTGCCCGTTGAAGACTGTGACTGCAAGATGTGCTCAGGAAATAAGGGGTTTTGCAGTTCTTGCATGTGTCCTGTTTGTATGAGCTTTGATTGTGCAAGTAATACTTGTAGTTGGGTTGGCTGTGATGTTTGCTCACACTGGTGTCATGCTACCTGTGCCATTCAGAAGAATCTAATCAAACCTGGGCCTATCTTGAAGGGTCCTTCTGGGACCTCTGAGATGCAGTTTCATTGTATTGGCTGTGGACATACTTCAGAAATGTATGGCTTTGTCAAAGAGGTCTTTGTGTATTGTGCCAAGGATTGGGGCCTAGAAACATTGATGAAGGAGCTTGACTGTGTGAGGAGGATTTTCCAGGGAAGCGAAGATCGCAAAGGGAAGGAATTGCATTTTAAGATGGATGATATGCTGTCAAAACTTCAAGCTAAACTGGTTTCTCCTTCGGATGCCTGCAACTTTATCATACAGTTTTTCAGCTACACTGATGGCACGTCAGATTTTCCAGCTTCTGGTACATCCACAAAGGATTTGCCAAAATCTAAGTCTAACCTTACAGTAGACACAACATCATCTCTTTCACAATCTACTTCTTTAATTCCAAAATACCCTTATGACATGAGCTTCACAAGGTCAAATGATCTTCAACAGAAAGAGCTGAAAACCTCCCTCTTGAGTGAGCAGAAAAAGGAGTCTGATCTGCACCTTGAGGCTTTACTAAGGAAAGGAGGAGGGCTTGAAAGCTTGGAGAGCATCATACGGATAAAAGAGGCCGAAGCCGGAATGTTCCAGAGCAAGGCAGATGAGGCAAGGAGAGAGGCTGAGGGATTCCAGAAGATGATCAAGACAAAGGCTGCACAGATGGAAGAGGAGTATGCAGAAAGGCTTGGCAAACTTTGCCTGCATGAGGCAGAGGAAAGGAGGAAGAAGAAATTAGAGGAACTCAACGTGTTGCAAAATTCACACTATGATTACTTCAACATGAAAAGCAGAATGCAAGATGAGATTCATGGTTTGTTGAAGAGAATGGAAGCAACAAAGCAGCAATGGGTCTAA 2499 0.4478 MIGGKDLVPNGVDTEGENSRSKVQQHQHRDFSQGKERPQEKKQSYPEKKKVGVDEFQSPPSKFVSSGSQELTLSYLCDNRKLSLVEREVDGRSSVKGKEVVVYGNSDQDQDELRFKSSLEEVTAFSARQYFDQDCLRRKVAVGNQKQDQDEKWVERDFLSLSESRENSSKRSIDEECERERSGGSKKQKLETLSLSLALPDVSLSLTASNALQNGDQLVKPKPGMPSTRPTTTINSCSNDYTAASMSQSYSHPFSHNPSCSITRNSTDNFEYSHSKDDQIWHCGEGTNGSVHSRFKPIGDGVALANYSFMQGNSHYKATSSDNQSFFPSELPARVRFEAQSEGSRGKNSENLRGLEGVDGGKMMKFPRSERILREIVSESIPTMALQFQEFTDEVITSIKEHLKGLIDTPEKKGELMNLQNRLGRRSDLTRETLSKCHKVQLEILTAIKMGLASFLSGKFQILEMVEVFLYMRCRNVNCKSLLPVEDCDCKMCSGNKGFCSSCMCPVCMSFDCASNTCSWVGCDVCSHWCHATCAIQKNLIKPGPILKGPSGTSEMQFHCIGCGHTSEMYGFVKEVFVYCAKDWGLETLMKELDCVRRIFQGSEDRKGKELHFKMDDMLSKLQAKLVSPSDACNFIIQFFSYTDGTSDFPASGTSTKDLPKSKSNLTVDTTSSLSQSTSLIPKYPYDMSFTRSNDLQQKELKTSLLSEQKKESDLHLEALLRKGGGLESLESIIRIKEAEAGMFQSKADEARREAEGFQKMIKTKAAQMEEEYAERLGKLCLHEAEERRKKKLEELNVLQNSHYDYFNMKSRMQDEIHGLLKRMEATKQQWV* 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1378 832 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 832 IPR004082 -
Vra11g1378 832 MobiDBLite consensus disorder prediction 339 358 - -
Vra11g1378 832 MobiDBLite consensus disorder prediction 169 189 - -
Vra11g1378 832 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 387 409 IPR004082 -
Vra11g1378 832 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 426 441 IPR004082 -
Vra11g1378 832 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 465 486 IPR004082 -
Vra11g1378 832 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 511 531 IPR004082 -
Vra11g1378 832 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 584 603 IPR004082 -
Vra11g1378 832 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 728 748 IPR004082 -
Vra11g1378 832 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 767 789 IPR004082 -
Vra11g1378 832 PANTHER PROTEIN OBERON 3 1 832 - -
Vra11g1378 832 MobiDBLite consensus disorder prediction 1 68 - -
Vra11g1378 832 MobiDBLite consensus disorder prediction 169 187 - -
Vra11g1378 832 Pfam Coiled-coil region of Oberon 693 821 IPR032535 -
Vra11g1378 832 MobiDBLite consensus disorder prediction 19 55 - -
Vra11g1378 832 MobiDBLite consensus disorder prediction 651 670 - -
Vra11g1378 832 Pfam PHD - plant homeodomain finger protein 474 598 IPR032881 -
Vra11g1378 832 Coils Coil 810 830 - -
Vra11g1378 832 Coils Coil 782 802 - -
Vra11g1378 832 CDD PHD_OBE1_like 504 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1378 Vra-Chr11 16755064 16759216 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1378 474 626 PHD Gene Family AT5G57380 22.876 8.87e-08 53.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1378 11 16755064 16759216 Vra11g1378 11 16755064 16759216 ECH