Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1375 ATGGGAGGTGGTCACATGGGGTGGTTCCTCTTGTGTTCTTCTCTGCTTTTTTTTGCTGTGATTGCTTCATCTGGGTCACTCGCAAACTTGCCCATCATAGCCTTTGAGGATGGCTACACCCCCTTGTTTGGGGACCATAATTTGGCCATCCATAGAGATGGCAAATCAGTTCACCTTTCTCTTGATGAAAGAACAGGTTCTGGGTTTGTGTCTCATGACCTTTACTTTCATGGCTACTTCAGTGCCTCGATTAAGTTGCCTTCCGATTACACAGCTGGAGTTGTGGTTGCATTTTATATGTCAAATGGTGACATGTTCCAGAAGAACCATGATGAGATAGACTTTGAGTTTTTGGGGAACATTAGAGGCAAAGACTGGAGGGTTCAGACCAATGTTTATGGCAATGGAAGTACCAACATTGGTAGAGAGGAAAGATGTGGCCTATGGTTTGATCCTGCTGAGGATTTCCATCAGTACAGTATTCTCTGGACTGATTCTAAGATCGTATTTTTCGTGGATGATGTTCCTATCAGGGAAGTTATTAGAACAGAATCAATGGGAGGAGATTTCCCCACAAAGCCAATGACTTTGTATGCAACCATATGGGATGCATCTGATTGGGCAACCAATGGAGGCAAATATAGAGTAAATTACAAGTATGCACCCTATGTTGCTGAGTTCTCAGACCTTGTTCTGCATGGCTGTGCAGTTGATCCCATTGAGCATGTGACCAAGTGTGACAGTAGTGCCCAAGATTCTGAGGGAGTTCCTTTTGGCATCAGCCCAGTACAAAGAACCAAAATGGGCAACTTCAGGTTGAAGCACATGACATACTCTTACTGCTATGACACAGTTAGATACAAAGTCCCTCCACCAGAGTGTGTCATCAAACCCCAAGAAGCTGAAAGGCTTAGAAAGTTTGATCCCATTACCTTCGGCAACGGCCGGCGCCACCGTGGAAAACGACACCACCGTAGTAGAGGTAGTCAGGAAGAGGCTGCCTCTTCATTTTAA 1014 0.4497 MGGGHMGWFLLCSSLLFFAVIASSGSLANLPIIAFEDGYTPLFGDHNLAIHRDGKSVHLSLDERTGSGFVSHDLYFHGYFSASIKLPSDYTAGVVVAFYMSNGDMFQKNHDEIDFEFLGNIRGKDWRVQTNVYGNGSTNIGREERCGLWFDPAEDFHQYSILWTDSKIVFFVDDVPIREVIRTESMGGDFPTKPMTLYATIWDASDWATNGGKYRVNYKYAPYVAEFSDLVLHGCAVDPIEHVTKCDSSAQDSEGVPFGISPVQRTKMGNFRLKHMTYSYCYDTVRYKVPPPECVIKPQEAERLRKFDPITFGNGRRHRGKRHHRSRGSQEEAASSF* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1375 337 CDD GH16_XET 33 294 IPR016455 GO:0010411|GO:0016762|GO:0042546
Vra11g1375 337 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 25 227 IPR000757 GO:0004553|GO:0005975
Vra11g1375 337 PIRSF EndGlu_transf 5 299 IPR016455 GO:0010411|GO:0016762|GO:0042546
Vra11g1375 337 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 27-RELATED 10 315 - -
Vra11g1375 337 SUPERFAMILY Concanavalin A-like lectins/glucanases 34 297 IPR013320 -
Vra11g1375 337 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 259 294 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Vra11g1375 337 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 10 315 IPR044791 GO:0004553
Vra11g1375 337 MobiDBLite consensus disorder prediction 307 337 - -
Vra11g1375 337 Pfam Glycosyl hydrolases family 16 37 219 IPR000757 GO:0004553|GO:0005975
Vra11g1375 337 Gene3D - 23 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1375 Vra-Chr11 16715206 16718664 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1375 11 336 Glycoside Hydrolase AT2G01850 66.972 1.57e-163 457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1375 11 16715206 16718664 Vra11g1375 11 16715206 16718664 ECH