Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0511 ATGACGATGGAAGATGAGTCCTTGGCAACAGTCCCATTTGACAGGGCTATTGAACAGGCAATTGTGTCAATAAAGAAAGGTGCATATTTACTTAAGTGTGGTCGTAGGGGAAAGCCGAAGCTCTGTCCTTTCAGACTTTCCCAGGATGAGAGAAATTTGATTTGGTATTCAGGACAGCAGGAAAAGCATTTGCGATTGAGTGTAGTTACAAAAATTGTTCAAGGCCAAGAAAATATAAGGTCCCAGAGGCAAAATGAACCCGAAAAGGAGTGCCATTCATTTTCACTAATCTATGCTAATGGTGAACGTTCTCTTGATCTGATATGCAAGGACAAGGCACAAGCTGCTTCTTGGTTTGTTGGCTTGAAAGCTGTCATCTCTAGGTGTCAGCATCCTAGAGCTTTTAGTAGTTTAAGAAGTTGCAAAGGTGTGCAGAGTTGTGTTAGTAGTCCTGCTGGGATCTTACGAAGAAAGAAAAATCTTGGCCTTTTGGATGATACCTCTCAGTTTACTCAGGTACACAGCTTATGTGCAAGTCCTACTTTGTCACTTTCCGAAAGGTGCTTTTCTGATGGCTTGTCATGCACTTCTGATAACCTATATTCATCGACATCTTTCCTCTCCAGCGCTCATGGTGTAACGAAGAATTCAGTGCCAAGTTCTCCATACATTGATCCAGAGGTTCATAGTAACATTGAATCAACTCGAACTGATAAGGAGCACAAGAAGAATTTGTCCTATAGGCATTTGACGCATTCTACCTCTGTACATTTAGGAAAAAGTAATGTATTGAAGGATGTAATGATATGGGGTGGAGGGATTGGGTGTCTTGTAGGGATTGTGAATGAAAGGTTTGTTCAAGGTGGGGTCTATTCTTTAGTGCCGAAGTTACTAGAATCAACTGCAATGTTAGATGTACAGAACATAGCTTTGGGAGGAAAACATGCTGCCTTAGTTACAAAACAAGGGGAAGTTTTTTGTTGGGGTCAAGGAAAGTGGGGAAGACTCGGGCAGAAAATTGATATGGACATTAGCTCCCCAAAAATAGTGGATTCTCTTAATGGTCTTCATGTAAAGCACGTTGCTTGTGGTGAATATCATACATGTGCTCTGACAGATTCTGGTGAAGTATATACTTGGGGAAATGATGTCTGCAGTGCAGATTTATTTAATGAAGGGAGAACTAGAAGTCAGTGGATACCTCAAAATCTTGGCGGATCCTTAGATGGTATTAGTATCTCGAGTATTGCTTGTGGAGAATGGCATACTGCGATTGTCTCTAGTTGTGGGAGGTTATTTACTTACGGAGATGGTACATTTGGGGTTCTTGGCCATGGCGATCTTCGGAGCTATTCAAGTCCAAAAGAAGTCGAGTCTCTTAGTGGACTAAGGGTGAGGTCTGTTGCATGTGGATCATGGCATACATCTGCTATTGTTGAAGTTATGATTGATCGTTTTAGGTACAATAGTGCTAGTGGTAAGTTGTTTACATGGGGTGATGGAGATGAGGGGAGGCTTGGTCATTCAGATAACGGAAGCAAGCTTGTACCAACATGTGTTACACAACTTGTCGACTATGATTTTGTTCAAGTGTCATGTGGAAGAATGTTGACTGTAGCACTCACTAACATGGGCAAGGTTTTTGCAATGGGAAGTGCCAAATATGGACAGTTAGGAAATCCACATGCGAAGGATAAAGCAGTCATGGTTGAAGGACAACTCAAACAAGAATTTGTTAAAGTTATATCAACCGGTTCATATCATGTTGCTGTTTTGACTTCTGCAGGGAGTGTTTATACATGGGGCAGGGGTGAAAGTGGCCAACTGGGGTTAGGTGATACTGAAGATAGATATACACCTTGTTTGGTTGAGGCTCTGAGAGATAGACAGGTAAATACTATCGCTTGTGGTCCAAGCTTCACAGCTGCAATCTGTTTACACAAACCTATTTCTATTAGTGACCAATCAACTTGTAGTGGTTGTAGGTTGCCATTTGGGTTCACAAGGAAGAAGCATAACTGCTATAACTGTGGCCTTTTGTTCTGCCGTGCTTGTAGTAGTAAGAAGATTATAAATGCACCTCTAGCCCCCAGTAAGAGCAAGGCTTTTAGGGTTTGTGATCAGTGTTTTGATAAACGACAGGGAGGTACACATTCAATAATGGCATCTAAGTCCAGAAATTACAACAGTCAACAGTTGTTGAAGCATCAACAAAAAATTGCTGATGTCACTGAAGACAGGGGAGAGACAACCGTGACACAAGGTCCTCTGCTATCTTTTGGTCAATCATGTTACAGGAAAAGTATGCCAAGTGGACGTAAGGATTGGAAAAACCACCCCGAAAGCCAACAGGATGTAGAAGATAGTTCTTCTATGCTAGGTGGAATGCCGCAGTGGGGGCAAGTTCCATGTCCTCCCATATTTAAAATTAATGGTACAGAAAATCCAGTTGTTCATGTTTCTTCATCCAAAAATAAATTAGCCACAGTTTCTCCTTTTAGTATGGAATCTACAACATATAACTTCTCTAATGTAGAGACAGATACAACTAAATCTGAGAAGATGCTGCTTGAAGAAGTTCATAGGCTGAGAACCGAGGCTAAGAGACTTGAAGAGCAATGTGAGCTTAAAACTCATAAAATACAAGAGTGTCAACAAAAAATACAGGAGAGTTGGTTTGTGGCAAGGGAGGAAGCTGCTAAATGCAAGGCAGCAAAAGAGGTGATAAAAGCTTTAGCACTAAGGCTTCATACAATATCAGGAAAAGATAACGCCGGGCAAGAAGCAAAAGTTGGACAACATGAATTTGTGCCTAATCTGGCAACCATAGTTACAGATATGAAGAGTCCAAGAGATTACAGTGGGGACAGTCTATCCAATTCTCCTATAGTATTCTCTAACACAATAAAATCCAAATTTGGGAGAAGCATGTTTCCCAAAAATGAAAATTCTAACTTTAGTAGTGGTGAGTCTCAACAAGACAATATCAATGGATTGAAGGCTGACTGGGTAGAACAATACGAGCCAGGTGTTTACATCACATTTACAACCTTACCATGTGGGAAAAAGGGCCTTAAGCGAGTGAGATTTAGTCGCAAGCGATTCTCAGAGAAGGAAGCGGAAAAATGGTGGGAAGAGAATCAGAGCACGGTGTATCACAAGTATGGGATTGAAGGATATATAAACACCAGCCAAAATCAGGTGAAAGGCTAA 3213 0.4121 MTMEDESLATVPFDRAIEQAIVSIKKGAYLLKCGRRGKPKLCPFRLSQDERNLIWYSGQQEKHLRLSVVTKIVQGQENIRSQRQNEPEKECHSFSLIYANGERSLDLICKDKAQAASWFVGLKAVISRCQHPRAFSSLRSCKGVQSCVSSPAGILRRKKNLGLLDDTSQFTQVHSLCASPTLSLSERCFSDGLSCTSDNLYSSTSFLSSAHGVTKNSVPSSPYIDPEVHSNIESTRTDKEHKKNLSYRHLTHSTSVHLGKSNVLKDVMIWGGGIGCLVGIVNERFVQGGVYSLVPKLLESTAMLDVQNIALGGKHAALVTKQGEVFCWGQGKWGRLGQKIDMDISSPKIVDSLNGLHVKHVACGEYHTCALTDSGEVYTWGNDVCSADLFNEGRTRSQWIPQNLGGSLDGISISSIACGEWHTAIVSSCGRLFTYGDGTFGVLGHGDLRSYSSPKEVESLSGLRVRSVACGSWHTSAIVEVMIDRFRYNSASGKLFTWGDGDEGRLGHSDNGSKLVPTCVTQLVDYDFVQVSCGRMLTVALTNMGKVFAMGSAKYGQLGNPHAKDKAVMVEGQLKQEFVKVISTGSYHVAVLTSAGSVYTWGRGESGQLGLGDTEDRYTPCLVEALRDRQVNTIACGPSFTAAICLHKPISISDQSTCSGCRLPFGFTRKKHNCYNCGLLFCRACSSKKIINAPLAPSKSKAFRVCDQCFDKRQGGTHSIMASKSRNYNSQQLLKHQQKIADVTEDRGETTVTQGPLLSFGQSCYRKSMPSGRKDWKNHPESQQDVEDSSSMLGGMPQWGQVPCPPIFKINGTENPVVHVSSSKNKLATVSPFSMESTTYNFSNVETDTTKSEKMLLEEVHRLRTEAKRLEEQCELKTHKIQECQQKIQESWFVAREEAAKCKAAKEVIKALALRLHTISGKDNAGQEAKVGQHEFVPNLATIVTDMKSPRDYSGDSLSNSPIVFSNTIKSKFGRSMFPKNENSNFSSGESQQDNINGLKADWVEQYEPGVYITFTTLPCGKKGLKRVRFSRKRFSEKEAEKWWEENQSTVYHKYGIEGYINTSQNQVKG* 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0511 1070 Pfam Regulator of chromosome condensation (RCC1) repeat 492 541 IPR000408 -
Vra10g0511 1070 Pfam Regulator of chromosome condensation (RCC1) repeat 430 478 IPR000408 -
Vra10g0511 1070 Pfam Regulator of chromosome condensation (RCC1) repeat 323 371 IPR000408 -
Vra10g0511 1070 Pfam Regulator of chromosome condensation (RCC1) repeat 596 644 IPR000408 -
Vra10g0511 1070 SUPERFAMILY PH domain-like 16 126 - -
Vra10g0511 1070 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 323 374 IPR000408 -
Vra10g0511 1070 Gene3D - 388 482 IPR009091 -
Vra10g0511 1070 Gene3D - 226 387 IPR009091 -
Vra10g0511 1070 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 375 429 IPR000408 -
Vra10g0511 1070 SMART fyve_4 646 715 IPR000306 GO:0046872
Vra10g0511 1070 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 16 1058 - -
Vra10g0511 1070 MobiDBLite consensus disorder prediction 770 791 - -
Vra10g0511 1070 Gene3D - 483 653 IPR009091 -
Vra10g0511 1070 Pfam FYVE zinc finger 654 712 IPR000306 GO:0046872
Vra10g0511 1070 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 652 714 IPR017455 -
Vra10g0511 1070 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 430 481 IPR000408 -
Vra10g0511 1070 Pfam Pleckstrin homology domain 18 124 IPR001849 -
Vra10g0511 1070 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 545 595 IPR000408 -
Vra10g0511 1070 SUPERFAMILY RCC1/BLIP-II 265 648 IPR009091 -
Vra10g0511 1070 Coils Coil 853 887 - -
Vra10g0511 1070 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 596 647 IPR000408 -
Vra10g0511 1070 CDD PH_PLC_plant-like 15 127 - -
Vra10g0511 1070 Pfam Transcription factor regulating root and shoot growth via Pin3 1001 1055 IPR013591 -
Vra10g0511 1070 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 654 724 IPR013083 -
Vra10g0511 1070 PRINTS Chromosome condensation regulator RCC1 signature 306 319 IPR000408 -
Vra10g0511 1070 PRINTS Chromosome condensation regulator RCC1 signature 325 341 IPR000408 -
Vra10g0511 1070 PRINTS Chromosome condensation regulator RCC1 signature 375 391 IPR000408 -
Vra10g0511 1070 PRINTS Chromosome condensation regulator RCC1 signature 416 432 IPR000408 -
Vra10g0511 1070 PRINTS Chromosome condensation regulator RCC1 signature 432 446 IPR000408 -
Vra10g0511 1070 PRINTS Chromosome condensation regulator RCC1 signature 534 552 IPR000408 -
Vra10g0511 1070 PRINTS Chromosome condensation regulator RCC1 signature 591 612 IPR000408 -
Vra10g0511 1070 PANTHER F12P19.9 PROTEIN 16 1058 - -
Vra10g0511 1070 SUPERFAMILY FYVE/PHD zinc finger 653 726 IPR011011 -
Vra10g0511 1070 Gene3D - 16 133 IPR011993 -
Vra10g0511 1070 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 493 544 IPR000408 -
Vra10g0511 1070 MobiDBLite consensus disorder prediction 770 784 - -
Vra10g0511 1070 ProSiteProfiles BRX domain profile. 1001 1056 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0511 Vra-Chr10 11004782 11014642 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0511 1002 1060 Major Intrinsic Protein MIP AT1G31880 44.068 6.59e-12 66.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0511 10 11004782 11014642 Vra10g0511 10 11004782 11014642 ECH