Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00376 ATGCTAACGATAATGGATCCCACCAAAAAGCGCAAGCTTGACGAGAACGGATATGGCGGCGAAGCCGATCACCTTAAACTCTCCCCGTCCGAAGCTCGCAAGGTAATCGAGCGCTTCACCCCCGACCAGCTAATTAACATCCTCCAAGACGCCGTTATCCGTCATCCCGACGTTCTCTCGGCCGCCCGAGCGATTGCTGACACCGACATCTCCCAGCGCAAGCTTTTCATCCGTGGCCTCGGCTGGGACACCACCACCGATGGACTCCGCTCCCTCTTTTCAACTTATGGTGAACTCGAAGAAGCCATTGTAATCGTCGATAAGGCTACTGGTAAGTCCAAGGGTTATGGCTTTGTGACTTTCCGCCACGTGGATGGGGCTCTACTAGCTCTTCGTGAGCCTAGCAAGCGTATTGATGGACGTGTGACTGTTACACAATTAGCTGCGGCAGGGAATTCGGGTTCTAACACCAACACAGCAGACATTGCGCAACGTAAAATATATGTATCTAATGTGCCACCGGATCTCCCAGGAGACAAGCTTTTAGCCCACTTCTCACTGTATGGGGAGATTGAGGAAGGTCCGTTGGGATTTGATAAACAGACGGGAAGGTCGAAAGGGTTCGCCCTTTTTGTGTACAAGACACCTGAAGGGGCACAGGCTGCGCTATTGGAGCCAGTGAAAAATGTTGAGGGACGGCAGTTAAATTGCAAGCTGGCGATAACGGATGGGAAGCAGCAACGAGGTGGGCCAGACGGGGTTCCGGCTCGTGGAAATACCCATGGAAATGGAATGGGGATGACTCCTGCAGCTGGGCCTGGTCCTGGGCCGGGTCAATACGGTGGTTCTGTCGGTATGGGTCCGTATGGAGGGTATTCTGGTGGGCATCAGGGTCAGCCTCCAATGGGTAACCATCCTTTGAATTCGTCTGTTGGTGGTGGGTTGTCTTCGATAGGGAGTCAGGCCCCGGCTTCAGTGGGTGGTGCTGGTGGGTTTGGTGGTGGTCATTATGGAGGTTATGGTGGGCCTACAGCGACAGGCTTTGGCAGCAGCGGTTATGGAGGAGGTAGTGGTGGGACCGGTGCTGGTGCCGGTGGTGGACATGGTTCTGCTGGAGGTAATGTGGGGCTTTCTTCTTTGTACAGATTACCAAGTTCTGGTGGAATGCAAGCTGGAGGATATCCTGATAGCGGTCACTATAGTTCGTCGGGTTATCAGAATCAGCATCTTCCTCCTGCTGGGGCGTCGCCAGTACCAAGGGTTCAACCTGGTTCCATGTATCCAAATGGCCCCCCTTACTACTAA 1305 0.5372 MLTIMDPTKKRKLDENGYGGEADHLKLSPSEARKVIERFTPDQLINILQDAVIRHPDVLSAARAIADTDISQRKLFIRGLGWDTTTDGLRSLFSTYGELEEAIVIVDKATGKSKGYGFVTFRHVDGALLALREPSKRIDGRVTVTQLAAAGNSGSNTNTADIAQRKIYVSNVPPDLPGDKLLAHFSLYGEIEEGPLGFDKQTGRSKGFALFVYKTPEGAQAALLEPVKNVEGRQLNCKLAITDGKQQRGGPDGVPARGNTHGNGMGMTPAAGPGPGPGQYGGSVGMGPYGGYSGGHQGQPPMGNHPLNSSVGGGLSSIGSQAPASVGGAGGFGGGHYGGYGGPTATGFGSSGYGGGSGGTGAGAGGGHGSAGGNVGLSSLYRLPSSGGMQAGGYPDSGHYSSSGYQNQHLPPAGASPVPRVQPGSMYPNGPPYY 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00376 434 FunFam UBP1-associated protein 2C isoform A 56 159 - -
Vivi7g00376 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 174 IPR000504 GO:0003723
Vivi7g00376 434 MobiDBLite consensus disorder prediction 243 319 - -
Vivi7g00376 434 SMART rrm1_1 166 238 IPR000504 GO:0003723
Vivi7g00376 434 SMART rrm1_1 74 146 IPR000504 GO:0003723
Vivi7g00376 434 SUPERFAMILY RNA-binding domain, RBD 158 265 IPR035979 GO:0003676
Vivi7g00376 434 MobiDBLite consensus disorder prediction 396 410 - -
Vivi7g00376 434 MobiDBLite consensus disorder prediction 388 434 - -
Vivi7g00376 434 MobiDBLite consensus disorder prediction 302 319 - -
Vivi7g00376 434 SUPERFAMILY RNA-binding domain, RBD 65 150 IPR035979 GO:0003676
Vivi7g00376 434 Gene3D - 153 300 IPR012677 -
Vivi7g00376 434 Gene3D - 64 152 IPR012677 -
Vivi7g00376 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 246 IPR000504 GO:0003723
Vivi7g00376 434 PANTHER GEO13361P1-RELATED 56 291 - -
Vivi7g00376 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 167 233 IPR000504 GO:0003723
Vivi7g00376 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 142 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00376 Vivi-Chr7 22084066 22087274 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00376 161 240 C2H2 Transcription Factor Family AT2G19380 43.750 3.06e-12 66.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g00376 7 22084066 22087274 Vivi7g00376 7 22084066 22087274 ECH