Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00225 ATGCTACTTACTGTGCAGAACAACGATTCGAAGCAGAATCAACCTCGTGGAACAAAAAAAATGGAAAATCCGAAACCAGATGGATCTGTTTCGAGGCGTGTTTCTCTCAGAAAGAGAGTTAATATGCGAAGTTACAATGAGGGTATGCTGGATGATGAGCTTTTTGACAAGTTGGATACTAGTTTAAAGAAGAAGAAGGGACCCAAATATGATGTCAATAAAGAGACTGACACCGAGGCTATGATTGCCTTCTCCCTTGGTTTCCCGATTGATGCTTTGCTTGACCACGAGATTCGATCTGGGGTTGTTAAAGAATTGGGTGGGAAAGAGCAGAATGATTATATTGTTATTAGGAATCATATTTTGGCTCTTTGGAGGGATAATGTTAGGATTTGGTTGACAAAGGGACAGATTAGAGAAACTGTCACTACTGAGTTTGAACCTTTGCTTAACTCTGCTTATGACTATCTTTTATATAACGGCCACATCAATTTTGGGGTTTCACCCTTGTTTATTTCCCAGTTTCCTGAGGCAAAGGAAGGGACTGTTATTGTTATTGGTGCTGGCCTTGCTGGCTTGGCTGCGGCAAGGCAGCTATTGTCCTTTGGTTATAAGGTTATGGTTTTGGAAGGTAGGAACCGTCCAGGTGGCAGGGTTTATACTCAGAAGATGGGGAAAGAGGGTAACTTTGCGGCTGTAGATCTTGGTGGGAGTGTTATTACTGGAATTCATGCTAATCCTTTAGCGGTTCTAGCACGCCAACTTTCTATTCCGCTTCATAAAGTTAGAGTTGATTGTCCTTTATACAAGCCAAACGGGGATCCGGTTGATAAGGAGTTAGATACAAATGTTGAATTTGCATTCAACAGGTTGCTTGACAAAGTTATGGAGCTGAGGAAAATTATGGGTGGGTTTGCAAGTGACACCTCACTTGGATCAGTCTTGGAGACACTCAAGGCTTTATATGCTGTGGCCCAAAGTACCGATGAGAAGCAATTATTGAATTGGCATCTTGCGAATTTAGAATATGCAAATGCTGGGTGTCTTTCAAATCTTTCGGCTGCCCATTGGGATCAGGATGATCCTTATGAAATGGGTGGTGATCATTGTTTTCTTGCTGGAGGCAATTGGAGATTGATAAAAGCTATGTGCGAAGGGGTTCCTATTTTTTATGGGAAGACCGCCAACACTATCAGATACGGAAATGAGGGTGTTGAGATTATTGTTGGAGATCAAGTTTTTCAAGCAGATTACGCCTTATGCACTGTGCCTCTCGGAGTTCTGAAAAAGAAGGCTATTAATTTTGAACCTGAATTACCTGCAAGAAAGCTGGAATCAATTGAGAGGATGGGTTTTGGGCTACTGAACAAAGTTGCTATGGTTTTTCCCCATGTGTTTTGGGGAGAAGAATCAGACACATTTGGATGTCTCAACGAAAATAGTCACGATCGTGGGGAGTTCTTTTTATTTTACAGTTACCATACTGTTTCTGGGGGCTCAACACTTATAGCACTGGTGGCTGGTGAAGCTGCACAAAACTTTGAAACCACTGATCCATCCATCTTGCTTCATCGGGTTTTGACCACTCTAAAAGGTATTTTTAATGCTAAAGGCATCACTGTGCCTGATCCAATACAGTCAATTTGTACCAGATGGGGAAGCGATCCCCTTTCTTATGGCTCATACTCCCATGTTAGTGTGCATTCATCTGGTAAGGATTATGATATACTTGCAGAAAATGTGGGGAACAGACTGTTCTTTGCAGGTGAAGCCACTAGTAGGCAGTTTCCAGCCACTATGCATGGCGCTTTCTTGAGTGGCTTAAGAGAAGCTTCACGCATTTACCAGTTAACCCATAATCAGCAAGTTAATCCTAAGAAATCCGTGCCTAAGAATGGAGGAGCGTTAAACAGGACCTTGATTAATTTATTCAAGAAGCCTGATTTGGAATCCGGGAAGTTTTCTTTCATATATGATTCTTCATCAGAAGATCTGCATTCAAAGGCGATTATGCAGATCACTTTTGGTTGTCCTGAAGAAATTTACCATGAGATATTAAACTGCTATCCCAATCCCACAGAGTTGCCAATGCAGCTTTACACTATTATCTCCCGTGAACAGGTGCAACAGATGCAGCAAATTACTGGAGAAGATAAAAAGATGTTCTCTTTTTTGACAAAGAACCTCGGGTTGAAATTTATGGGTATAAATACCTTACTTAATGCTGGCAACTCGGTTATCACTAGTATTGCTGCCTCAAGAAAAGGCAAGAGGAACCGCTCACTTACTCCACAACTTGATAATTCAAAGAAGAGTCCATGA 2322 0.4156 MLLTVQNNDSKQNQPRGTKKMENPKPDGSVSRRVSLRKRVNMRSYNEGMLDDELFDKLDTSLKKKKGPKYDVNKETDTEAMIAFSLGFPIDALLDHEIRSGVVKELGGKEQNDYIVIRNHILALWRDNVRIWLTKGQIRETVTTEFEPLLNSAYDYLLYNGHINFGVSPLFISQFPEAKEGTVIVIGAGLAGLAAARQLLSFGYKVMVLEGRNRPGGRVYTQKMGKEGNFAAVDLGGSVITGIHANPLAVLARQLSIPLHKVRVDCPLYKPNGDPVDKELDTNVEFAFNRLLDKVMELRKIMGGFASDTSLGSVLETLKALYAVAQSTDEKQLLNWHLANLEYANAGCLSNLSAAHWDQDDPYEMGGDHCFLAGGNWRLIKAMCEGVPIFYGKTANTIRYGNEGVEIIVGDQVFQADYALCTVPLGVLKKKAINFEPELPARKLESIERMGFGLLNKVAMVFPHVFWGEESDTFGCLNENSHDRGEFFLFYSYHTVSGGSTLIALVAGEAAQNFETTDPSILLHRVLTTLKGIFNAKGITVPDPIQSICTRWGSDPLSYGSYSHVSVHSSGKDYDILAENVGNRLFFAGEATSRQFPATMHGAFLSGLREASRIYQLTHNQQVNPKKSVPKNGGALNRTLINLFKKPDLESGKFSFIYDSSSEDLHSKAIMQITFGCPEEIYHEILNCYPNPTELPMQLYTIISREQVQQMQQITGEDKKMFSFLTKNLGLKFMGINTLLNAGNSVITSIAASRKGKRNRSLTPQLDNSKKSP 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00225 773 ProSiteProfiles SWIRM domain profile. 73 174 IPR007526 GO:0005515
Vivi7g00225 773 Pfam SWIRM domain 100 165 IPR007526 GO:0005515
Vivi7g00225 773 PANTHER FLAVIN MONOAMINE OXIDASE 182 620 - -
Vivi7g00225 773 SUPERFAMILY FAD/NAD(P)-binding domain 181 616 IPR036188 -
Vivi7g00225 773 Gene3D - 78 174 IPR036388 -
Vivi7g00225 773 Gene3D - 183 613 IPR036188 -
Vivi7g00225 773 FunFam Lysine-specific histone demethylase 1A 78 177 - -
Vivi7g00225 773 MobiDBLite consensus disorder prediction 15 34 - -
Vivi7g00225 773 MobiDBLite consensus disorder prediction 1 36 - -
Vivi7g00225 773 Pfam Flavin containing amine oxidoreductase 190 614 IPR002937 GO:0016491
Vivi7g00225 773 SUPERFAMILY Homeodomain-like 75 175 IPR009057 -
Vivi7g00225 773 Gene3D - 265 570 - -
Vivi7g00225 773 SUPERFAMILY FAD-linked reductases, C-terminal domain 451 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00225 Vivi-Chr7 12805678 12809123 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI or SNF-SWI3 Vivi7g00225 Amino_oxidase 1.2e-89 CL0063