Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00188 ATGAACGAGAAAGCCAACGTTTCTAAGGAGCTCAACGCCAAGCACAAAAAGACACTAGAAGGACTTCTTAAATTACCAGAGAATAGGGAATGTGCTGACTGCAAAGCTAAAGGACCAAGATGGGCTAGTGTCAATCTTGGCATCTTTATTTGCATGCAGTGTTCAGGAATACATCGAAGTCTTGGGGTACATATTTCGAAGGTTCGCTCTGCTACTTTGGACACTTGGCTCCCAGAGCAGGTTGCATTTATTCAATCTATGGGAAATGAGAAAGCAAATAGTTATTGGGAAGCAGAATTACCTCCAAATTATGACAGAGTTGGTATTGAAAACTTCATTCGTGCAAAGTATGAAGACAAGAGATGGGTTGCAAGGGACACTAAGCCAAAATCACCTTCTAGACTACCAGAAGAGAAAAGTCATTCACAATGGCAAAAATCTGTTGAAAGAGTTGGGCATAATCATGTTGCAGAGAATAATTTTGAAGAAAGGAGGAAAATCCAACTATCAAATGCAAATCCTGCTACTAGAATTAGTATTCTTGCTCCTCCTAAAGGACATGTTCAGGTAGCTCCAGTGGCTAAACATCAGCATATTGAGAAAGTGGAACCTCTGGTGCCACAACTGCAAGCTGAAACATCACAGACAACTGGCACAGCTCATGATCCCCCTCCCAAAGTTGATTTTGCAACGGACCTTTTTGACATGTTGTCTATGGATGATCCAAATGAAAAGGGCTCTGACGCCGCTGATACTACTGCTGATGATGATAACAACTGGGCAGGTTTTCAGTCTGCTGCAGAGACGTCAACAGCTGAGAAAACTGACACCAGGAAATCGTTTGAGAGTACACCCCAGCCCAGCTCTGGAATTGACGATCTATTTAAAGACTCATCTTCAGTAACGCCAATCTCTGCTCTTGAAAAACCACAAAAAGATATAAAAAATGATATTATGAGCCTCTTTGAAACGAAGCAGAACAATATAGTGTCTCCATTTGCTATGCATCAACAGCAGTTGGCTATGCTAGCACAACAACAGTCCCTTATAATGGCTGCTGCTGCTGCTGCTAAATCTGCTAGCGGGGATGCCAAATATCCTGCTAATGTACAGCAACCTAGTCTCAATAATCCTATCCAAAGTTGGCCAGCTGCAAGCTACCCAATCCCAGGAGTAACTCCCGTGGGTGATCAAGGAGAATTGCAGAAACTTATGCAGACAATGAACATGACTTCCGCCCATCCAGCAGAGAGCTCAGTTCAGTATCCACCATCTAGAATTTTGAATAATCTTGTGCTAGATGCCAATAGAAGGAAACATTGA 1323 0.4255 MNEKANVSKELNAKHKKTLEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEDKRWVARDTKPKSPSRLPEEKSHSQWQKSVERVGHNHVAENNFEERRKIQLSNANPATRISILAPPKGHVQVAPVAKHQHIEKVEPLVPQLQAETSQTTGTAHDPPPKVDFATDLFDMLSMDDPNEKGSDAADTTADDDNNWAGFQSAAETSTAEKTDTRKSFESTPQPSSGIDDLFKDSSSVTPISALEKPQKDIKNDIMSLFETKQNNIVSPFAMHQQQLAMLAQQQSLIMAAAAAAKSASGDAKYPANVQQPSLNNPIQSWPAASYPIPGVTPVGDQGELQKLMQTMNMTSAHPAESSVQYPPSRILNNLVLDANRRKH 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00188 440 CDD ArfGap 19 117 - -
Vivi7g00188 440 FunFam stromal membrane-associated protein 1 isoform X1 1 128 - -
Vivi7g00188 440 MobiDBLite consensus disorder prediction 253 271 - -
Vivi7g00188 440 MobiDBLite consensus disorder prediction 238 252 - -
Vivi7g00188 440 MobiDBLite consensus disorder prediction 237 297 - -
Vivi7g00188 440 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Vivi7g00188 440 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Vivi7g00188 440 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Vivi7g00188 440 MobiDBLite consensus disorder prediction 281 297 - -
Vivi7g00188 440 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Vivi7g00188 440 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Vivi7g00188 440 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Vivi7g00188 440 Gene3D Arf GTPase activating protein 1 130 IPR038508 -
Vivi7g00188 440 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
Vivi7g00188 440 MobiDBLite consensus disorder prediction 124 146 - -
Vivi7g00188 440 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 427 IPR044520 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00188 Vivi-Chr7 10941173 10946964 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00188 16 163 C2H2 Transcription Factor Family AT4G05330 40.881 9.57e-31 119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g00188 7 10941173 10946964 Vivi7g00188 7 10941173 10946964 ECH
Vivi1g00215 1 4238772 4241429 Vivi7g00188 7 10941173 10946964 ECH