Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06619 ATGGCTATGGCTAGAGATAAAGAAGAAGATGAAGAGGTACAGAATCAAAATCAAAAGGGTGGGAAGAGGATGAAATGCATGAACACGATGATGAAGAATGAACAAGAAAACCAAGTTGTTGATGAAGAAGAAGATGAAAGTGAGCTTCCATTGAAACCAGAGTTTTTCTTCTACCCAACAACTCCAACTTCCTTTGTTGTATCAGATGCACTTGAATCAGATTTTCCAATCATTTATGTCAATAAAGTGTTCGAAATTTCAACTGGGTATCGTGCTCATGAAGCCCTTGGTCGCAACTGCCGGTTCTTACAGTATAGAGATCCTCGAGCTCAGAGGCGGCATCCTTTGGTGGATCCGGTTGTGGTGTCTGAGATTAGAAGATGTCTTGAGGAAGGTATTGAGTTCCAAGGTGAACTTTTGAATTTCAGGAAGGATGGTACTCCTTTGGTGAATAGACTCAGGCTTACACCAATTCATGATGATGATGGAGTTGTGACACATGTGATAGGTATTCAAATCTTTTCGGAGGCGAATATTGATCTTAACCATGTTTCGTATCCGGTTTATAGAGAGACTTGCATTCAAGATGTTGATAAAAGTAGTACTAAATATTCTCCGAAGAGTGGAAGATTGTTGTACAGTCCGCAGCAGCAGCAGAGGCGAGAGATGTGTGGCATTCTTCAGCTCTCTGATGAAGTCTTGGCGCATAATATTTTATCGCGTTTGACACCGAGGGATGTTGCGTCAATTGGTTCTGTTTGCAGGAGGATCCGTCAATTAACGAAGAACGAGCATGTTAGGAAGATGGTTTGTCAAAATGCATGGGGCAAAGAAGTGACAGGTACATTGGAGCTGATGACCAAGAAGTTAGGATGGGGCCGTTTGTCTCGAGAGCTTACTACTCTCGAGGCTGTTTGCTGGAAAAAAGTGACAGTTGGAGGCGGAGTCGAGCCGTCCCGCTGCAATTTCAGCACTTGTGCTGCAGGAAATAGACTTGTATTGTTTGGAGGTGAAGGAGTTGATATGCAGCCTATGGATGATACTTTTGTTCTAAACCTCGACGCTAAAAATCCAGAATGGCAAAGGGTCATCGTGAAAGCATCCCCGCCAGGACGGTGGGGTCACACGCTCTCTTGCTTAAATAGTTCTTGGCTAGTGGTTTTCGGTGGATGCGGTAGGCAAGGTTTACTCAATGATGTGTTTGTGCTTGACTTGGATGCTCAACAACCAACATGGAAGGAGGTCTTCGGCGGAGCACCACCTCTTCCTCGATCATGGCACAGTTCTTGCACAATTGAAGGTTCCAAATTGGTTGTCTCAGGCGGTTGCACGGATGCCGGAGTGCTTCTTAGTGACACATATTTGCTCGATCTAACAATAGACAATCCTACATGGAGAGAAATTCCAACTCCATGGACTCCGCCGTCTAGGTTAGGACACTCGCTCTCGGTCTATGGTAGGACGAAGATTCTCATGTTTGGTGGACTTGCCAAGAGTGGACACTTACGGTTAAGATCAGGTGATGCTTATACAATTGATTTAGAAGCTGAACAGCCACAATGGAGGCAACTAGAATGCAGTGCATTCACTGGTTTAGCAAATCAAAACGCTGTTGTACCTCCTCCTAGACTAGATCATGTTGCGGTAAGCATGCCTTGTGGGAGGATTATTATATTTGGAGGTTCCATCGCAGGTCTTCACTCGCCGTCTCAGCTATTTCTATTGGACCCGGCCGAAGAAAAGCCGACATGGAGGATCCTCAATGTTCCGGGGCAACCACCTAAGTTCGCTTGGGGTCATAGCACTTGTGTGGTTGGAGGGACTAGGGTTTTGGTGTTGGGTGGACATACCGGAGAGGAATGGGTACTAAACGAGTTGCATGAGTTATGCCTGGCAAGTCGACAGGACTCCGATATGTAA 1920 0.4552 MAMARDKEEDEEVQNQNQKGGKRMKCMNTMMKNEQENQVVDEEEDESELPLKPEFFFYPTTPTSFVVSDALESDFPIIYVNKVFEISTGYRAHEALGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFRKDGTPLVNRLRLTPIHDDDGVVTHVIGIQIFSEANIDLNHVSYPVYRETCIQDVDKSSTKYSPKSGRLLYSPQQQQRREMCGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGKEVTGTLELMTKKLGWGRLSRELTTLEAVCWKKVTVGGGVEPSRCNFSTCAAGNRLVLFGGEGVDMQPMDDTFVLNLDAKNPEWQRVIVKASPPGRWGHTLSCLNSSWLVVFGGCGRQGLLNDVFVLDLDAQQPTWKEVFGGAPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTYLLDLTIDNPTWREIPTPWTPPSRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGDAYTIDLEAEQPQWRQLECSAFTGLANQNAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPAEEKPTWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASRQDSDM 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06619 639 Gene3D - 298 501 IPR015915 GO:0005515
Vivi5g06619 639 FunFam Putative LOV domain-containing protein 297 502 - -
Vivi5g06619 639 CDD F-box_AtADO-like 225 271 - -
Vivi5g06619 639 SUPERFAMILY Kelch motif 307 525 IPR015915 GO:0005515
Vivi5g06619 639 Gene3D - 219 270 - -
Vivi5g06619 639 NCBIfam PAS domain S-box protein 74 171 IPR000014 -
Vivi5g06619 639 FunFam Adagio protein 1 53 183 - -
Vivi5g06619 639 Gene3D PAS domain 58 183 - -
Vivi5g06619 639 Pfam PAS domain 71 172 IPR000014 -
Vivi5g06619 639 Pfam Galactose oxidase, central domain 320 370 - -
Vivi5g06619 639 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 42 633 - -
Vivi5g06619 639 FunFam Putative LOV domain-containing protein 503 635 - -
Vivi5g06619 639 Pfam F-box domain 226 263 IPR001810 GO:0005515
Vivi5g06619 639 SUPERFAMILY Kelch motif 474 631 IPR015915 GO:0005515
Vivi5g06619 639 MobiDBLite consensus disorder prediction 1 18 - -
Vivi5g06619 639 Gene3D - 502 634 IPR015915 GO:0005515
Vivi5g06619 639 CDD PAS 61 171 IPR000014 -
Vivi5g06619 639 SMART pac_2 136 177 IPR001610 -
Vivi5g06619 639 MobiDBLite consensus disorder prediction 1 25 - -
Vivi5g06619 639 Pfam Kelch motif 544 591 IPR011498 GO:0005515
Vivi5g06619 639 Pfam Galactose oxidase, central domain 434 485 - -
Vivi5g06619 639 Pfam Galactose oxidase, central domain 385 432 - -
Vivi5g06619 639 SUPERFAMILY F-box domain 222 301 IPR036047 GO:0005515
Vivi5g06619 639 SUPERFAMILY PYP-like sensor domain (PAS domain) 65 172 IPR035965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06619 Vivi-Chr5 173334526 173337224 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06619 64 173 AGC Kinase Gene Family AT5G58140 44.545 7.23e-21 95.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g06619 5 173334526 173337224 Vivi5g06619 5 173334526 173337224 ECH