Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04480 ATGGAAAGAGATTTCTTGAGTCTATGCTCAAACCAAGAAATTAACAATGAAGCTTCCAAAGACTCAGGATTAAGAAAAGTTTCAGCAGTAAAATGGCCTTATTTTAACAAAGTCTCGGCTCATCCATATTCGATGCCTTTTAATGTTTCTGAAGAAGATAAGAAATCTTTCAAACATGACGGCCAAGATGGCGTTCATTTTTCCGTGAATCCGTATCCTGTACACCATGATGTGAATCGTGCTCATGACATGAAGATGTTTTCAGTTTCCAATCAAGCAATTTCAGTTCCCGCAGGACATCTGTTCCTTAAGAATCATTTTGCAACTGTTGGTCAGAATATGAATGGTGCTAATGTGAAGCAACCAATACGTGCGGGATCACCATTAACTGCACCTCATTCAGGGCTTCCAAGGGTTGGCGCCGTTGCTGGTTTGGTTGAATGTGTAAAACCATCTGCACCTGCTCCTCAACTTACCATGTTCTATGCTGGCACTGTGAACATCTTCAAAGATATCACTCCCGAGCAGGTACATGCCATCATGTTGTTGGCTGGAAATGGCGTATCAGCAGCGTCAAACATGGCTCAATCTGAAGTTCAGGCACCTAGCTCAAAGTTTGCATCAGATGATCATGGCGTGCCTATGAGTCCACCTGTAAATATACCACCCATCTCTGCTATTTCAAGTCCTTTATCTGTTTCTTCACATACTGGTCCACAATCAGGGAGTGGCTCAGTTTGCAGTGATGAATTTTTGACTGCTAAAGCATCTAGAGGCCCTACTCCTACCACCTCTGCTAGCAAAGTGGAGACTCCAAAAGTAGTCAATGCAACCACCATGTTTTCATCAGCTATACCGCAGGCTCGCAAAGCATCATTGGCTCGATTTTTGGAAAAGCGCAAGGAAAGGGTGATGAGTGCAGCACCTTATAACATCAACAAGAAATCTGAGGATGCACCATCATTGAATTCAATGGCTGCTAACATCTCCGCAACTACTGGTACTAGTACGCTGTTATTGAAACAAGGATAA 1032 0.4302 MERDFLSLCSNQEINNEASKDSGLRKVSAVKWPYFNKVSAHPYSMPFNVSEEDKKSFKHDGQDGVHFSVNPYPVHHDVNRAHDMKMFSVSNQAISVPAGHLFLKNHFATVGQNMNGANVKQPIRAGSPLTAPHSGLPRVGAVAGLVECVKPSAPAPQLTMFYAGTVNIFKDITPEQVHAIMLLAGNGVSAASNMAQSEVQAPSSKFASDDHGVPMSPPVNIPPISAISSPLSVSSHTGPQSGSGSVCSDEFLTAKASRGPTPTTSASKVETPKVVNATTMFSSAIPQARKASLARFLEKRKERVMSAAPYNINKKSEDAPSLNSMAANISATTGTSTLLLKQG 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04480 343 SMART tify_2 151 186 IPR010399 -
Vivi4g04480 343 Pfam tify domain 154 185 IPR010399 -
Vivi4g04480 343 Pfam Jas motif 286 310 IPR018467 -
Vivi4g04480 343 MobiDBLite consensus disorder prediction 225 247 - -
Vivi4g04480 343 MobiDBLite consensus disorder prediction 200 247 - -
Vivi4g04480 343 ProSiteProfiles Tify domain profile. 151 186 IPR010399 -
Vivi4g04480 343 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 97 317 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04480 Vivi-Chr4 172038844 172042195 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04480 30 316 Tify Gene Family AT3G17860 35.220 6.44e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vivi4g04480 tify 9.7e-13 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g04480 4 172038844 172042195 Vivi4g04480 4 172038844 172042195 ECH