Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04454 ATGGATTCAAAGTCACTGTGCTTCATAACCCATCAAGAAATTTTCAATGTGGTTCGATCTGGGGACCGTGAAGGACTCAAAGAGCTTCTGAAACATGTTAGTAAAGGTGAATCCTCAAGTGGGTCAGTGTCATCATCGTCAATTTCTGAGTTCATGTTCATGCAGAATGATGCTGGAGAGACGTTGTTGTATATAGCTGCGGATTGTGGTGTTAAGGAGATTTTCAGCTTCTTGTTGAGTTTTTGTGATTTGGAGATTCTCAAAATCAGGTCTAAATCTGATATGAATGTGTTTCATATTGCAGCAAAGCGTGGCCATTTGGAAATTGTGAGGGAGATTTTGAGGATTTGGCCTGAGGCTTGTAATTTATGCGACTCGTCGAACACTAGTCCACTTTATTTTGCTGCTGTTCAAGACCGTTTGGATGTGGTGAATGCTATTTTGGATGTTGATGTTAGTTCAATGATGATAGTAAGGAAAAATGGAAAGACTGCATTGCACAATGCTGCTAGGTATGGAATTCTTCGCGTTGTAAAAGCACTTATTGCGAGGGATTCGGCGATTGTTTGCATTAAAGATAGGAAGGGCCAAACAGCACTGCATATGGCTGTTAAAGGACAGTGTGCCTCAGTAGTTGAGGAGATTTTACAAGCCGACCCGATTGTATTGAACGAACGAGATAAGAAGGGGAATACTGCTCTTCACATGGCTACTCGGAAAGCTCGTTCGCAGATAGTGAGCTTTCTGTTAAGCTATACATCTATGAATGTCAATGCCATCAATAATCAACTAGAAACAGCGTTGGATTTAGCAGATAAACTTCCGTACGGAGACACGTCTTTGGAAATCAAGGAAGCACTTTCGGAATGCGGTGCCAAGAATGCAAGACATATAGGCAAATTGAATGAAGCCATAGAACTTAAAAGAGCAGTGAGTGACATAAAACACGAGGTGCAGTCACAGCTCATACAGAACGAAAAGACTCGCAGACGGGTTTCAACTATAGCTAAGGAATTGAGAAAAATCCATAGAGAAGCAATTCAAAACACCATAAATTCTGTCACAGTAGTCGCTGTCCTTTTTGCATCTATAGCATTCATGGCTTTGTTCACATTGCCAGGTCAATATAAAATGATACAACCCGAGGCAGGGAAGGCGAACATATCGCACGAAGTTGCGTTCAGTGTCTTCTGTCTTTTGAACGCAACGTCTCTTTTCATTTCTCTTGCAGTTGTTGTTGTTCAAATCACTTTGGTAGCTTGGGACACAAGAGCTCAAACGCAGATCGTGTCAGTGATTAACAAGCTTATGTGGATGGCTTGTACGTGCACTTGTGGAGCTTTTCTTGCAATAGCTTTTATTGTTGTTGGAAAGGAAACATGGATGGCTATTACAGTAACTGTTTTGGGAACCCTAATTCTAGTTGGGACTCTTGCATACTTGTGCTACTTTGTGTTTCGGCGACATTTTGGATTCCAAAGGGAATCACAGAGAGGGATAGTTAAGAGACCAAGCGGAAGCAAATCGCGGTCATGGTCTTACTCGGCACATATATCAGATGAGGAGGAATATAATTCTGATGTTGAGAAGATCTATGCTCTATGA 1605 0.4156 MDSKSLCFITHQEIFNVVRSGDREGLKELLKHVSKGESSSGSVSSSSISEFMFMQNDAGETLLYIAADCGVKEIFSFLLSFCDLEILKIRSKSDMNVFHIAAKRGHLEIVREILRIWPEACNLCDSSNTSPLYFAAVQDRLDVVNAILDVDVSSMMIVRKNGKTALHNAARYGILRVVKALIARDSAIVCIKDRKGQTALHMAVKGQCASVVEEILQADPIVLNERDKKGNTALHMATRKARSQIVSFLLSYTSMNVNAINNQLETALDLADKLPYGDTSLEIKEALSECGAKNARHIGKLNEAIELKRAVSDIKHEVQSQLIQNEKTRRRVSTIAKELRKIHREAIQNTINSVTVVAVLFASIAFMALFTLPGQYKMIQPEAGKANISHEVAFSVFCLLNATSLFISLAVVVVQITLVAWDTRAQTQIVSVINKLMWMACTCTCGAFLAIAFIVVGKETWMAITVTVLGTLILVGTLAYLCYFVFRRHFGFQRESQRGIVKRPSGSKSRSWSYSAHISDEEEYNSDVEKIYAL 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04454 534 ProSiteProfiles Ankyrin repeat profile. 229 251 IPR002110 GO:0005515
Vivi4g04454 534 Gene3D - 12 353 IPR036770 -
Vivi4g04454 534 ProSiteProfiles Ankyrin repeat profile. 161 188 IPR002110 GO:0005515
Vivi4g04454 534 Pfam Domain of unknown function 345 454 IPR026961 -
Vivi4g04454 534 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 16 513 - -
Vivi4g04454 534 ProSiteProfiles Ankyrin repeat region circular profile. 229 251 - -
Vivi4g04454 534 Pfam Ankyrin repeats (3 copies) 98 184 IPR002110 GO:0005515
Vivi4g04454 534 Pfam Ankyrin repeats (3 copies) 195 258 IPR002110 GO:0005515
Vivi4g04454 534 SUPERFAMILY Ankyrin repeat 14 275 IPR036770 -
Vivi4g04454 534 ProSiteProfiles Ankyrin repeat region circular profile. 161 188 - -
Vivi4g04454 534 SMART ANK_2a 195 225 IPR002110 GO:0005515
Vivi4g04454 534 SMART ANK_2a 127 157 IPR002110 GO:0005515
Vivi4g04454 534 SMART ANK_2a 93 123 IPR002110 GO:0005515
Vivi4g04454 534 SMART ANK_2a 229 259 IPR002110 GO:0005515
Vivi4g04454 534 SMART ANK_2a 58 86 IPR002110 GO:0005515
Vivi4g04454 534 SMART ANK_2a 161 190 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04454 Vivi-Chr4 171506131 171508520 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04454 1 534 Miscellaneous Gene Families AT2G01680 66.542 0.0 697
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g04454 4 171506131 171508520 Vivi4g04454 4 171506131 171508520 ECH