Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04450 ATGACTATTCTCAGCGCTCTCCGATCATCAAAACTTATCACCTGGAAGCCCACCGGGAAGCTCCAGCAAACCCTAGCAGGATCTGTGGAGCGGAGGGGAATCTCTTTGCATTCCGGCAAGGTTTCGACGGTGAGACTGTGTCCTGGATTGGCTGGTCAAGGAAGGTACTTCGATTTTCGTTCCAATTTGGTCCCTGCTTCTGTTGAATTTGCTCAGGTTTCGCCTCTTTGTACTACTTTGTGTAAAGATGGGTTGAGAATTCGGACTGTGGAGCATCTGCTTTCTGCGTTGGAAGGTGCTGGCGTTGATAATTGTAGGATTCAGATAGAGAATTTGGGTGATCAAGGTGATGAGGCCGAGATTCCTATATTTGATGGGTCGGCAAAGGAATGGGTGGAAGCCTTGGAAGAAGTTGGTTTAGAGACAGCAACTGATATTGATGGAAAAAGCTGTGAGAAAATTGCTCCACATGTGAATGAACCAATGCATGTTTGGAGGAATGATTCTTTTATTGCTGCATTTCCCTCTGATGTGGTTCAAGTAACTTATGGTATAAGCTTTCCACAGGCACCTGCTATTGGCTGCCAATGGTTTTCTACAACCCCCTTGGATGATTTGGTTTATTCCATGCAAATAGCATTGTCAAGAACCTTCTGCATCTATGAGGAGGTTGAGCAAATGCGCAGTGCTGGACTTATCAAAGGAGGTTCTCTAGAAAATGCTATTGTGTGCAGTATTAGTAAAGGTTGGTTGAATCCACCTCTTCGTTTCAGTGATGAACCATGTCGTCACAAGATTTTAGATCTGATTGGCGATCTCTCGCTCTTTGCTCAGTTTGGTAGTCAAGGACTCCCTGTGGCACACATAGTAGCTTACAAAGGTGGCCATGCATTGCATGTTGATTTGACACGCCGACTGATGGGAATTACATGA 933 0.4512 MTILSALRSSKLITWKPTGKLQQTLAGSVERRGISLHSGKVSTVRLCPGLAGQGRYFDFRSNLVPASVEFAQVSPLCTTLCKDGLRIRTVEHLLSALEGAGVDNCRIQIENLGDQGDEAEIPIFDGSAKEWVEALEEVGLETATDIDGKSCEKIAPHVNEPMHVWRNDSFIAAFPSDVVQVTYGISFPQAPAIGCQWFSTTPLDDLVYSMQIALSRTFCIYEEVEQMRSAGLIKGGSLENAIVCSISKGWLNPPLRFSDEPCRHKILDLIGDLSLFAQFGSQGLPVAHIVAYKGGHALHVDLTRRLMGIT 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04450 310 Gene3D lpxc deacetylase, domain 1 20 146 IPR015870 GO:0008759|GO:0009245
Vivi4g04450 310 PANTHER UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE 1, MITOCHONDRIAL-RELATED 5 308 IPR004463 GO:0008759|GO:0009245
Vivi4g04450 310 Gene3D lpxc deacetylase, domain 2 157 309 IPR011334 GO:0008759|GO:0009245
Vivi4g04450 310 SUPERFAMILY Ribosomal protein S5 domain 2-like 160 307 IPR020568 -
Vivi4g04450 310 Pfam UDP-3-O-acyl N-acetylglycosamine deacetylase 22 307 IPR004463 GO:0008759|GO:0009245
Vivi4g04450 310 NCBIfam UDP-3-O-acyl-N-acetylglucosamine deacetylase 22 306 IPR004463 GO:0008759|GO:0009245
Vivi4g04450 310 SUPERFAMILY Ribosomal protein S5 domain 2-like 21 142 IPR020568 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04450 Vivi-Chr4 171460426 171465546 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04450 5 306 Carbohydrate Esterase AT1G25054 65.563 1.38e-148 418
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g04450 4 171460426 171465546 Vivi4g04450 4 171460426 171465546 ECH