Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04445 ATGTCTTCACTAACAACAACCTCCGAAACGCAAGAGCCTCAAGCGCCTCTCCTCCGTTCACGCCATGAAGGAGGACGCTCTACATCCCTCGCGCTTCTTCTCGGACGCGCTGCCGGACGGAGAGGACCGTCGGTTCTCGTGCGAGAGACGGCGGCGCGTGAACTCGAAGAGCGTCGTGCTGACTGGGGATACTCGAAGCCGGTGGTAGCGTTAGATATATCATGGAACATGGCGTTCGTTGTGGTTTCGGCGGTGATGTTGTTTTGCACCGTTGACGAGAATCCGATCACGCCGATCCGAGTTTGGATCATAGGTTACGCGCTGCAGTGTTTCGTTCATGTTGTGCTAGTGTGGCTTGAGTACCACCGCCGTAGCAGGAGAGATTTGAGACGGTGGCAGAGGGAGAACGACGGTGCGGCCAGTTCCGACGGAAGTGACAGTGATGACGGCGACGGGAATTCTTCTCAGTCCAGGTTCACCAAGCGATGTGAATCAATAAACACTGGGGTTTCATTCGTTTGGTGGATGGTGGGCTTTTACTGGGTTGTCTCTGGTGGTGATATCCTTCTGGAAAATGCTCCAAGCTTGTACTGGTTGGCTGTTATCTTTCTGGCATTTGATGTCTTTTTTGCCATCTTCTGTGTTGTTTTGGCATGCTTGATCGGCATTGCTCTCTGTTGTTGTCTGCCCTGCATCATTGCTATTCTCTATGCTGTTGCAGGACAGGAGGGTGCATCAGAAGCAGACCTTAGTATACTTCCAAAATACAGATTTCGATTATTAAACAATGAGGAGAAGGCTAGCGGTGGAGCTGGATTGATGGTTCCCACAGAAACATCCAGTGGATACTTGGCTAATGAACGGATACTTTTACCTGAGGATGCAGAATGCTGTATATGCCTCTGTCCATACGAGGATGGAGTGGAGCTTCACACTCTTCCCTGCAACCATCATTTCCATTCTTCATGCATAATAAAATGGCTAAAGATGAATGCAACTTGTCCTCTTTGTAAGTACAATATCCTCAAGGGAAACGAACAGGTATAA 1047 0.4947 MSSLTTTSETQEPQAPLLRSRHEGGRSTSLALLLGRAAGRRGPSVLVRETAARELEERRADWGYSKPVVALDISWNMAFVVVSAVMLFCTVDENPITPIRVWIIGYALQCFVHVVLVWLEYHRRSRRDLRRWQRENDGAASSDGSDSDDGDGNSSQSRFTKRCESINTGVSFVWWMVGFYWVVSGGDILLENAPSLYWLAVIFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFRLLNNEEKASGGAGLMVPTETSSGYLANERILLPEDAECCICLCPYEDGVELHTLPCNHHFHSSCIIKWLKMNATCPLCKYNILKGNEQV 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04445 348 Coils Coil 342 348 - -
Vivi4g04445 348 MobiDBLite consensus disorder prediction 1 15 - -
Vivi4g04445 348 ProSiteProfiles Zinc finger RING-type profile. 297 338 IPR001841 -
Vivi4g04445 348 SMART ring_2 297 337 IPR001841 -
Vivi4g04445 348 SUPERFAMILY RING/U-box 285 342 - -
Vivi4g04445 348 CDD RING-H2_PA-TM-RING 296 338 - -
Vivi4g04445 348 Pfam Ring finger domain 296 338 IPR001841 -
Vivi4g04445 348 PANTHER TARGET OF ERK KINASE MPK-1 37 346 - -
Vivi4g04445 348 FunFam E3 ubiquitin protein ligase RIE1 277 345 - -
Vivi4g04445 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 346 IPR013083 -
Vivi4g04445 348 MobiDBLite consensus disorder prediction 137 158 - -
Vivi4g04445 348 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04445 Vivi-Chr4 171308604 171313516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04445 1 347 C3H Transcription Factor Family AT1G68070 67.622 3.84e-171 478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g04445 4 171308604 171313516 Vivi4g04445 4 171308604 171313516 ECH