Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04437 ATGCCCGCGTCTTTGCAGAAAATGGCGCACTCCAGCACGAGCTCCGGCGGCAACTGCAAAGGCTCCGCCGTTTCTGAGTTTCCGGCCGGGTTAAGAGTTCTCGTCGTTGATGATGACGTCACTACTTTGAAGATTATCGAGCGAATGTCTCTTCGCTGCCATTACCGCGTCACAACATGTTCTGAGGCTACTGTTGCTTTGAAAATTCTGCGGGAGAGGAAAGGCTGTTTTGATGTTGTGCTGAGTGATGTTCATATGCCAGACATGGATGGCTATAAACTCCTTGAACATGTTGGATTGGAAATGGATCTTCCTGTTATTATGATGTCTGTTGATGATAGGACAAGTACTGTCATGAAGGGAATTAGACACGGGGCTTGTGATTATTTTATTAAGCCTGTAAGGTTGGAAGAACTAAGGAATATATGGCAGCATGTTGCCAGGAAATTTTTGAACGAAAACAAGGAACATGATAATTCTGGCAGCGTAGAAGATAATGACCGCAATGCACGAGGGAATGATGATAATGATAATGATAATACTTCTGTTGCTGGTACAACAAAAGGAATAGTTAAAGAGCAAAAAAAGAGGAGCAATTTAAAATATGAAGATGTTGAATTGGAGAATGATGATCTATCTACATCTAAGAAGCCTCGTGTAGTATGGTCAGTAGAACTGCATCAACAATTTGTCAGTGCTGTGAATCAACTAGGGCTAGACAAGGCTGTACCAAAGAGAATACTTGAATTGATGAATGTCACTGGTTTGACGAGAGAAAATGTTGCAAGTCATTTGCAGAAATTTAGACTTTATTTGAAGCGATTAAGTGGAGTCGCACAACAACAAAATGGGATGCTAAACAGAGTTACTGGGACTATAGAATCCAAGCTAGCTGCTACGGGAAGATATGACATAGAAACTTTGGTAGCGTCTGGCCAAATTTCCCCTGAAACACTTGCAGCTCTTCGTGCTGGGCTCTTAGGTCACCCGGTAACTAACATAATGCCTACTTTGGACCAGACTGCAATAGTACATGCATCTGTTCACGGGCCAAAACATTCTTGTGCTGATGATCCTACTGAAGCATATGGTCCGCCTCATGTAAACTTCCCTTCCAACAGTGTCAATAATTTCCCTCACTCCATCTTTAAAGTAGATGATTCATCATCCAGATTTGGAGCATGGCCGCCATCTAATACACTTGGTTCAGTCTCAAGGGGGAGGTTAGGCATTCAGAACAATAACATAGTGATTGATATATTGCAGCACCAACAAAGGCATCAGCATCAGCAGAAACAACAGCATTTGCCGACTCATGATCAAAATCGATCAATCAATGTGCAACCATCTTGCTTGGTTGTTCCTGCTCAATCTTCTGACACTTTCCAGGCAGTAAATAGTGTTGCTTCTGTCAACAAGGATTGTAGTTTTGACAGAAATGCCATTATTGATTATAGTCAATTGTCACAAAAATCAAATAATTCATCAAGTACATCTCAATATCCTGGCGGAAACACCAAAGCTACCTCTATTTCTCCTCTAATGCCCTCTTTTTCAGTAGGCTCCAGCAATAACAATATTCAGAATCAGAACTCAACTTCAACATCTGGTGCTGCAAGACCTTTGCCTAGCCATCTGCCAGTGACGTTTAGACAAGTTCCATATGATATTAAATCCAGTGATTCACTTGATCAATTATGTCTTAGAAATCTTGGATTTGTTGGCAAAGCTAACTGCATACCAAATTTTAAAAATAAAATTGAGTCATCTGCAAGTGATTTTAGTCATAGGAAAGTATTCATGGCTAGCAATGGTAACACAGTGAAGGAAGAACCAGATTTGATCAGATATCCAAATGTGAGCCACCCAGTTCTACAGAGTTATCCATCTCATGACCATTCAAGTGCATTCACATAA 1917 0.409 MPASLQKMAHSSTSSGGNCKGSAVSEFPAGLRVLVVDDDVTTLKIIERMSLRCHYRVTTCSEATVALKILRERKGCFDVVLSDVHMPDMDGYKLLEHVGLEMDLPVIMMSVDDRTSTVMKGIRHGACDYFIKPVRLEELRNIWQHVARKFLNENKEHDNSGSVEDNDRNARGNDDNDNDNTSVAGTTKGIVKEQKKRSNLKYEDVELENDDLSTSKKPRVVWSVELHQQFVSAVNQLGLDKAVPKRILELMNVTGLTRENVASHLQKFRLYLKRLSGVAQQQNGMLNRVTGTIESKLAATGRYDIETLVASGQISPETLAALRAGLLGHPVTNIMPTLDQTAIVHASVHGPKHSCADDPTEAYGPPHVNFPSNSVNNFPHSIFKVDDSSSRFGAWPPSNTLGSVSRGRLGIQNNNIVIDILQHQQRHQHQQKQQHLPTHDQNRSINVQPSCLVVPAQSSDTFQAVNSVASVNKDCSFDRNAIIDYSQLSQKSNNSSSTSQYPGGNTKATSISPLMPSFSVGSSNNNIQNQNSTSTSGAARPLPSHLPVTFRQVPYDIKSSDSLDQLCLRNLGFVGKANCIPNFKNKIESSASDFSHRKVFMASNGNTVKEEPDLIRYPNVSHPVLQSYPSHDHSSAFT 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04437 638 MobiDBLite consensus disorder prediction 154 190 - -
Vivi4g04437 638 ProSiteProfiles Response regulatory domain profile. 32 147 IPR001789 GO:0000160
Vivi4g04437 638 MobiDBLite consensus disorder prediction 1 20 - -
Vivi4g04437 638 MobiDBLite consensus disorder prediction 423 442 - -
Vivi4g04437 638 Pfam Response regulator receiver domain 33 142 IPR001789 GO:0000160
Vivi4g04437 638 MobiDBLite consensus disorder prediction 154 175 - -
Vivi4g04437 638 NCBIfam myb-like DNA-binding domain, SHAQKYF class 217 270 IPR006447 GO:0003677
Vivi4g04437 638 SMART REC_2 31 143 IPR001789 GO:0000160
Vivi4g04437 638 Gene3D - 31 166 - -
Vivi4g04437 638 SUPERFAMILY CheY-like 30 154 IPR011006 -
Vivi4g04437 638 PANTHER TWO-COMPONENT RESPONSE REGULATOR 31 432 IPR045279 GO:0009736
Vivi4g04437 638 MobiDBLite consensus disorder prediction 488 540 - -
Vivi4g04437 638 FunFam Two-component response regulator 213 276 - -
Vivi4g04437 638 SUPERFAMILY Homeodomain-like 214 274 IPR009057 -
Vivi4g04437 638 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 214 273 IPR017930 -
Vivi4g04437 638 Pfam Myb-like DNA-binding domain 219 267 IPR001005 -
Vivi4g04437 638 Gene3D - 213 276 - -
Vivi4g04437 638 MobiDBLite consensus disorder prediction 488 543 - -
Vivi4g04437 638 CDD REC_typeB_ARR-like 33 147 - -
Vivi4g04437 638 PIRSF RR_ARR_type-B 7 632 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vivi4g04437 638 FunFam Two-component response regulator 31 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04437 Vivi-Chr4 171222592 171228222 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04437 23 287 Response Regulator Gene Family AT2G25180 56.015 7.66e-90 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vivi4g04437 Response_reg 5.6e-20 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g04437 4 171222592 171228222 Vivi4g04437 4 171222592 171228222 ECH