Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04418 ATGATGAGAAGTTCGAAACGGAAGCTTCAACATGAAGCACCACTGCACGCTGTTAGCAAAAAGCTCCGGTCGAAGATTCCTCGCCGGAGAAGACGTCAGATCTCGCCGGTGCTAATTGCTTCACCGAGATTCAAAGTGAATGGCGAGAATCGGAATGTGTCAGTTATTTCTGTGGATTCGAGTTCCGGCTCTGATTTCGCCGGCGGTGAAGTTTCGTGCAATTCGAGCAGGATTTCTGCTGTTTTGTCCAGTAAGCGTTCTAGAAATGAAATTTCAAGCGAAATTGATTGTGTTCGGAAGGAGGAATGTGTGAGTTTGTTGAGAAATCCGAGATTTGAGAAGCGGAGTGAAAATCAAGTGGAAGTTTCTGAGACTTCGTGTGTGGATTCTAATTCTGGAGTTCGTGAACGGAGTAGGAGCTTGATTTTGAAGTTCAACGGTGGGAAAGAGAATGATGAAGTTTCGGAAGTTACTTGTGCTGAGAATTCAAAATCGAGTAACGGAAATTTGAATATAACGCGAAATGATGTCATTTCTGTTAGTTCTGGTGCTCGAGAAACCTCGTGTATAGATGAGAACGGCACGGATTTGAAAGCGCAATCGATTATGAAGCAATTTCCGGATAATTCAGGTTACGATTCCGATCTAGCTTGCTCTGAGCAATTGCAATGTTCTTACTACGAAGATGAATCAGAGTATTGTTCAAGTCAGGGAACTACGTTCTCTGATCTTCACTCCGAGATGTTTGGTGAATGCTCGGACTGTAGTCAGTCTCTGTTTGAATCTGGTAGCGAGTTTTCACAGGGATCCGTTGGTGAAACACCTTCACACACTTATTCGTTGCTCCTTCAATACCGAGAGGAATTCATGACGTTAGGTTATTCTGTTAACAATACTTCACGTGTTGAAGGAGATGCTTCTCTTCAATGCAATTTTTCAAGGTTTGAAGATTTGGATGATGAAGACAGTTACCAGATGCTTAGAAAGAGGGAGCGGAAACAAGTTTTCATGTGGAATTATGCTGAGAGATATTTCTCTACCACGGATTTTACTGAGCTTATATTTCAGCAACGCTGCCGAATGGTTCACTGGATTGTTGAGCATTCTTATCGAAAACAGCTTCGACAAGAGACAATATTTCTTGCAATCAACCTACTTGACCGTTTCCTGAGCAAGGGATACTTCAAAGCTGAAAAAAGCCTTCAAATTGTTGGAATAGCGTGTTTCACGTTGGCAGTCAGAATTGAAGAAAACCAGCAATGTAACAGAGTGGGGCAAAAATATTTCTACATAGAAAAAAGTGTGTACAGTAGATGTGAAGTGGTGGCTATGGAATGGATGGTGCAGGAGGTGCTCAAGTTTCAGTGTTTTCATCCAACCATCTACAATTTCTTGTGGTTCTATCTTAAAGCTGCTAATGCTGATGCTGTTATGGAGAAAAGGGTCACTTGCCTAGCATTACTGGCTCTGTCAGGTCCTGATCAACTGTGTTACTGGCCCTCAACTATTGCTGCTGCACTTGTAATCCTTGCTTGTCTAGAATACAATGAGAACGCTTCCAACAAAGTCATAGGGATCCACATTAGATCAAAGGATGAGAATTTGCATGAATGCATGGAGTGCCTGGAGTGGTTGTTACGCTATCTATGA 1650 0.4236 MMRSSKRKLQHEAPLHAVSKKLRSKIPRRRRRQISPVLIASPRFKVNGENRNVSVISVDSSSGSDFAGGEVSCNSSRISAVLSSKRSRNEISSEIDCVRKEECVSLLRNPRFEKRSENQVEVSETSCVDSNSGVRERSRSLILKFNGGKENDEVSEVTCAENSKSSNGNLNITRNDVISVSSGARETSCIDENGTDLKAQSIMKQFPDNSGYDSDLACSEQLQCSYYEDESEYCSSQGTTFSDLHSEMFGECSDCSQSLFESGSEFSQGSVGETPSHTYSLLLQYREEFMTLGYSVNNTSRVEGDASLQCNFSRFEDLDDEDSYQMLRKRERKQVFMWNYAERYFSTTDFTELIFQQRCRMVHWIVEHSYRKQLRQETIFLAINLLDRFLSKGYFKAEKSLQIVGIACFTLAVRIEENQQCNRVGQKYFYIEKSVYSRCEVVAMEWMVQEVLKFQCFHPTIYNFLWFYLKAANADAVMEKRVTCLALLALSGPDQLCYWPSTIAAALVILACLEYNENASNKVIGIHIRSKDENLHECMECLEWLLRYL 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04418 549 Pfam Cyclin, N-terminal domain 324 455 IPR006671 -
Vivi4g04418 549 SUPERFAMILY Cyclin-like 459 546 IPR036915 -
Vivi4g04418 549 Coils Coil 549 549 - -
Vivi4g04418 549 ProSitePatterns Cyclins signature. 358 389 IPR006671 -
Vivi4g04418 549 SMART cyclin_7 363 450 IPR013763 -
Vivi4g04418 549 SUPERFAMILY Cyclin-like 318 455 IPR036915 -
Vivi4g04418 549 PIRSF Cyclin_A_B_D_E 290 547 IPR046965 GO:0016538|GO:0044772
Vivi4g04418 549 PIRSF Cyclin_A_B_D_E 45 237 IPR046965 GO:0016538|GO:0044772
Vivi4g04418 549 Pfam Cyclin, C-terminal domain 459 543 IPR004367 -
Vivi4g04418 549 PANTHER CYCLINS 291 541 IPR039361 -
Vivi4g04418 549 Gene3D - 339 450 - -
Vivi4g04418 549 Gene3D - 451 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04418 Vivi-Chr4 170924141 170928583 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04418 358 545 Core Cell Cycle Gene Families AT5G25380 32.821 3.60e-19 88.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g04418 4 170924141 170928583 Vivi4g04418 4 170924141 170928583 ECH