Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04417 ATGGAAGTTGAAGTTGATTGTGTGATATCAGTAGACCATGCAGATCAAAGAGCCGAAGCGATTCCGTGTTCGACAGCTACACCGAATTGGACCGTTCATGTTTCAGATATAAGAACGGTTAAAGTGAGTAACATATCACAGATTACTTCGAAACAAGACATTGAAGAATTCTTTTCATTCTCAGGTGATATTCAATATATTGAGATGCAAAGAGAATCTGATCGCACTCAGGTTGCTTATGTTACCTTTAAGGATTCGCAGGGAGCAGAGACAGCAGTTCTCTTGACAGGTTCTAAGATAGGTGACCTATATGTCACTATATCACCTGTGGAGAAGTACCAGCTTCCCCCCGAAGCTCTTCCGTCGAGTCCTACAAACCAAAGTAAGGCTGCTGTTAAGAAGGCTGAAGATGCGATAAGTACCATGCTTGCCAAGGGTTTCATTTTAGGAAAGGATGCAATCAACAAGACAAAATCAATAGATGAACGACTTCAATTGACCTCTAATGCTTCTTCAACAGTTGCTTCTATTGATCGTAAAATTGGTTTAAGTGATAAACTAAGTATTGGAACAACCATTGTCAATGAAAAGGTGAAAGAGATGGATGAAAGGTACCAGCTTTCTGGAATCACAAAGTTGGCTTATGCTGTTGCTGAGCAAAAGGCAAGTAGTGCTGGATCTGCTATCATGAGCAATTCTTATGTCTTAACCGGAGCTTCATGGATGTCAAGTGCGTTTGGCGCTATTGCAAAGGCAGCCGGGGATGTCAGCACGAAGACCAAGGAGAAGGTTGAACAAGCTGAGGTGCAAAAAAATGAGATTATTTACAGTGAAAGAAAAGGGACGGTCGATGAGTTTACTCAGATGATGCACTTTGAGCAGTCTTTAAACAGCGGCCCTGCAGTCGTTCCTATTAATTCCAACAATGACATTAAAGCTGGTAATTTTCTAACTTGA 957 0.4127 MEVEVDCVISVDHADQRAEAIPCSTATPNWTVHVSDIRTVKVSNISQITSKQDIEEFFSFSGDIQYIEMQRESDRTQVAYVTFKDSQGAETAVLLTGSKIGDLYVTISPVEKYQLPPEALPSSPTNQSKAAVKKAEDAISTMLAKGFILGKDAINKTKSIDERLQLTSNASSTVASIDRKIGLSDKLSIGTTIVNEKVKEMDERYQLSGITKLAYAVAEQKASSAGSAIMSNSYVLTGASWMSSAFGAIAKAAGDVSTKTKEKVEQAEVQKNEIIYSERKGTVDEFTQMMHFEQSLNSGPAVVPINSNNDIKAGNFLT 318
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04417 318 SUPERFAMILY RNA-binding domain, RBD 31 113 IPR035979 GO:0003676
Vivi4g04417 318 SMART rrm1_1 39 108 IPR000504 GO:0003723
Vivi4g04417 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 102 IPR000504 GO:0003723
Vivi4g04417 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 112 IPR000504 GO:0003723
Vivi4g04417 318 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 37 268 - -
Vivi4g04417 318 Gene3D - 34 108 IPR012677 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vivi4g04417 Vivi-Chr4 170921947 170923948 Tandem
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g04417 4 170921947 170923948 Vivi4g04417 4 170921947 170923948 ECH