Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03819 ATGGGAACGAGTCATATGTGTCTGTTCTTTTTCATGTTCTTGTTCCATTCTTTTGTCTTCCTTCTACTTTCTTCTTCTGTCTCATCCAGAAATTTTCCTATTACACCTTTTGATGAAGGCTATTCACCCTTGTTTGGAGACCATAACATGATCATTCATTCTGATTTCAAAACTGTACATCTCTCTCTTGATGAATCTTCAGGGTCTGGATTTGCTTCTCATGATATTTACCTTCATGGGTATTTTAGTGCTTCCATTAAATTACCTTCTGATTACACTGCTGGAGTTGTTGTTGCATTCTATTTATCAAATGGGGACATGTATGAGAAGAACCATGATGAAATAGACTTTGAATTTTTGGGAAATATAAGAGGCAAAGATTGGAGGATTCAAACCAATATTTATGGAAATGGAAGTACAAACATTGGAAGAGAAGAAAGATATGGTTTATGGTTTGATCCTGCTGAGGATTTTCATCACTACAGCATTCTCTGGTCAGATTCTAAGATCATATTTTATGTAGACAATGTTCCTATAAGAGAAGTAAAGAGAACAACATCGATGGGAGGAGATTTCCCATCAAAACCAATGACATTGTATTCAACCATATGGGATGGATCTACATGGGCTACCAATGGAGGAAAATACAAAGTAAACTACAAATATGCACCTTTTGTTGCTCAATTCTCTGACTTTGTTCTACATGGTTGTGCTGTTGATCCTATTGAACATGTGACTAACTGTGACAGTCTTCAAACTTCTGAAACACTTCCTTCTGGTGTAATTTCACAAGTGGAAAGAAACAAAATGGACAGCTTTAGGTTAAAACACATGACATATTCTTACTGTTACGACCGAACCCGATACAAAGTTCCTCTACCGGAGTGTGTGATCGATTCGCGACAAGCTGAAAGGCTAAGAAAATTGGATCCGGTTACGTTTGGTAATGGAAGGCATCGCCGTGGTATGAGACACCATCACATAGCAAAAGAAGCTGCCTCGTTTTAG 1008 0.377 MGTSHMCLFFFMFLFHSFVFLLLSSSVSSRNFPITPFDEGYSPLFGDHNMIIHSDFKTVHLSLDESSGSGFASHDIYLHGYFSASIKLPSDYTAGVVVAFYLSNGDMYEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTNIGREERYGLWFDPAEDFHHYSILWSDSKIIFYVDNVPIREVKRTTSMGGDFPSKPMTLYSTIWDGSTWATNGGKYKVNYKYAPFVAQFSDFVLHGCAVDPIEHVTNCDSLQTSETLPSGVISQVERNKMDSFRLKHMTYSYCYDRTRYKVPLPECVIDSRQAERLRKLDPVTFGNGRHRRGMRHHHIAKEAASF 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03819 335 Gene3D - 23 296 - -
Vivi4g03819 335 SUPERFAMILY Concanavalin A-like lectins/glucanases 37 299 IPR013320 -
Vivi4g03819 335 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 31 296 IPR044791 GO:0004553
Vivi4g03819 335 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 27 229 IPR000757 GO:0004553|GO:0005975
Vivi4g03819 335 CDD GH16_XET 35 296 IPR016455 GO:0010411|GO:0016762|GO:0042546
Vivi4g03819 335 FunFam Xyloglucan endotransglucosylase/hydrolase 24 298 - -
Vivi4g03819 335 PIRSF EndGlu_transf 1 301 IPR016455 GO:0010411|GO:0016762|GO:0042546
Vivi4g03819 335 Pfam Glycosyl hydrolases family 16 39 221 IPR000757 GO:0004553|GO:0005975
Vivi4g03819 335 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 261 296 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03819 Vivi-Chr4 157385073 157387281 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03819 9 322 Glycoside Hydrolase AT1G14720 67.405 1.16e-162 455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g03819 4 157385073 157387281 Vivi4g03819 4 157385073 157387281 ECH