Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01231 ATGTCATCACCTAACTACGCTCAGTCCCACGCGCCACTCCTTCGCCCACGTCGCGTGTCTCGCACGCCCGTCCTCGCTCTCCTTCTCGGCCGCCGCGGACCTTCCGTTCTTGTCCGTGAAACCGCCGCGCGCGAGCTCGAAGAGAGGCGCGCCGACTGGGGATACTCGAAGCCGGTGGTGGTGCTCGATGTGACGTGGAACGCGGCCTTCGTGGTGGTCGCGGCGGTTATGTTAGGTTGTAGTGTGGAGGAGAATCCTAACACGCCGATTCGGTTGTGGATCTGCGGGTACGCGGCGCAGTGTTTGGTTCATGTGGCGTTGGTGTGGTTGGAGTACAGGAGGAGGAACGGAGGTGGAGGAGGAAGGGACGAGGAATCTCTTGATGGAGATGTCAATGATAGTGAGGATGATGATGATGTTGAATTTCGGAATTCTTCTCGTTCCGGATTTGCAAAACGATGTGCATCGTTGAATACCATGCTTTCATTGATTTGGTGGATGGTGGGCTTTTACTGGGTTGTCTATGGTGGTGATATTCTAATGCAAGATGCTCCACGGTTGTACTGGTTGGCTGTTGTCTTTCTAGCATTTGATGTCTTCTTTGCCGTCTTTTGTGTTGCTTTGGCATGCTTAATTGGCATTGCCCTCTGCTGCTGTTTACCCTGTATTATTGGTATTCTCTATGCAGTTGCTGGACAGGAGGGTGCATCTGAAACAGATCTTAGTATACTTCCAAAATATAAGTTTCATGCGGCAGGCAATGAGGAAACACCTAGTCCGAGAGGTGGATCAATGGTTCCCATTGAAAATAGCAGTGGTGCAAATGAACGAGTACTTTCACCGGAGGATGCGGAATGCTGCATATGCATCTCTCCTTATGAGGATGAAGCAGAGCTTCACGCACTTCCTTGTAACCACCATTTTCATTCCACATGCATAGTGAAATGGTTAAAGATGAATGCAACTTGTCCTCTTTGCAAGTTCAATATTCTAAAGGGAAATGAACAGGTGTGA 1014 0.499 MSSPNYAQSHAPLLRPRRVSRTPVLALLLGRRGPSVLVRETAARELEERRADWGYSKPVVVLDVTWNAAFVVVAAVMLGCSVEENPNTPIRLWICGYAAQCLVHVALVWLEYRRRNGGGGGRDEESLDGDVNDSEDDDDVEFRNSSRSGFAKRCASLNTMLSLIWWMVGFYWVVYGGDILMQDAPRLYWLAVVFLAFDVFFAVFCVALACLIGIALCCCLPCIIGILYAVAGQEGASETDLSILPKYKFHAAGNEETPSPRGGSMVPIENSSGANERVLSPEDAECCICISPYEDEAELHALPCNHHFHSTCIVKWLKMNATCPLCKFNILKGNEQV 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01231 337 CDD RING-H2_PA-TM-RING 285 327 - -
Vivi2g01231 337 MobiDBLite consensus disorder prediction 118 143 - -
Vivi2g01231 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 232 331 IPR013083 -
Vivi2g01231 337 Pfam Ring finger domain 285 327 IPR001841 -
Vivi2g01231 337 ProSiteProfiles Zinc finger RING-type profile. 286 327 IPR001841 -
Vivi2g01231 337 SUPERFAMILY RING/U-box 276 331 - -
Vivi2g01231 337 PANTHER TARGET OF ERK KINASE MPK-1 29 335 - -
Vivi2g01231 337 FunFam E3 ubiquitin protein ligase RIE1 266 334 - -
Vivi2g01231 337 SMART ring_2 286 326 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01231 Vivi-Chr2 51006286 51011515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01231 3 336 C3H Transcription Factor Family AT1G68070 67.251 3.01e-167 468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g01231 2 51006286 51011515 Vivi2g01231 2 51006286 51011515 ECH