Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01223 ATGGGATTTGGCGGTGGTTTGAAGGCGGCGATGTTAGTGTCGTCGTCGTTGAGTCACGCGCGACCGCTAACATGCGCGTCGTCGTCGCGATTAGTGTCGCAACCACACGACCTTGTGAAATGGGTAACGAGAGAAGGTGGTTTCGTGCATCGTGCGGTGAAGATAGCGCAACTCGATTCCGGTGGTTGTGGATTAGGGTTAGTGGCTAAGGAAGAGATTCCGATTGGTGCTGATTTAATTGTTCTTCCTCAACATCTTCCTTTGCACTTTACGTCTTTTCAGCAGGATCAGAAGAATGATGAGAACTCACTCCTCCTTCAATTGAGCTCACATGTTCCTGATGAACTATGGGCAATGAAACTGGGTTTGAAGCTTCTTCATGAAAGGGCAAAACTTGAATCTTTTTGGTGGCCATACATCAGTAATCTCCCAGAAACATTCTCTCTTCCTATCTTTTTTCCTGGGGAAGACATCAAGAATTTGCAGTATGCTCCTGTTCTTCACCAGGTCAACAAAAGATGCCGATTTCTTCTTGATTTTGAGCAACAAGTCAAACGTGCGTTAGTTGGTGTTAAACCAGATAAGCATCCTTTTGGTGGTCAAGAAGTGGATGCTTCATCTCTGGGATGGGCGATGTCGGCAGTTTCATCTAGAGCATTCAAGTTACATGGTAACAAGAATTCAAATGGGATAAACTTTGATATACCTATGATGCTTCCTCTAATTGACATGTGTAATCATAGTTTCAATCCAAATGCTAGAATTGTTCAGGAACAAGAAAGTGGTAGCAGTAACATGCGGGTGAAGGTTGTGGCTGAGAAAGTAATCAAGGAAGATGATCCTTTATTACTGTGCTATGGATGTTTAAACAACGATCTTTTCCTTCTTGATTATGGATTCGTGATACAATCAAACCCTTATGACTGTATCGAGCTCAGATATGACGGTGCTCTTTTGGAGGCTGCAAGCATGGCAGCTGGAGTTTCTTCACCAAACTTCTCGACACCTGCTCCATGGCAGGAACTTATTTTATCACAGCTAAATCTTGCTGGAGAAGCTCCTGATCTCAAGGTGAGCATCGGTGGTCAAGAAATAATCGAAGGCCGTTTATTGGCTGCACTGAGAGTACTCCTCGCAACTGATAAAGAAACTGTACAGAAGTATGACCTCAACACACTCAAGTCTTTAGATGCTGAGGCTCCTCTGGGTGTTGCAAATGACATAGCTGTATTTCGTACATTGATCGCTCTCTGTGTCGTTGCATTGGGACACTTTCCCACCAAATTAATGGATGATGAATCTTTATTGAAGCAGGGTGCTTCAGGTTCAACAGAGTTAGCCATTCAGTTCAGAATCCAAAAGAAGTCTATAATTATAGATGTTATGAAAAATCTTGCTAGGAAGGTAAAGGTTCTTTCATCAAATGAGACAGTTACTGCTGAAGGCTAA 1449 0.43 MGFGGGLKAAMLVSSSLSHARPLTCASSSRLVSQPHDLVKWVTREGGFVHRAVKIAQLDSGGCGLGLVAKEEIPIGADLIVLPQHLPLHFTSFQQDQKNDENSLLLQLSSHVPDELWAMKLGLKLLHERAKLESFWWPYISNLPETFSLPIFFPGEDIKNLQYAPVLHQVNKRCRFLLDFEQQVKRALVGVKPDKHPFGGQEVDASSLGWAMSAVSSRAFKLHGNKNSNGINFDIPMMLPLIDMCNHSFNPNARIVQEQESGSSNMRVKVVAEKVIKEDDPLLLCYGCLNNDLFLLDYGFVIQSNPYDCIELRYDGALLEAASMAAGVSSPNFSTPAPWQELILSQLNLAGEAPDLKVSIGGQEIIEGRLLAALRVLLATDKETVQKYDLNTLKSLDAEAPLGVANDIAVFRTLIALCVVALGHFPTKLMDDESLLKQGASGSTELAIQFRIQKKSIIIDVMKNLARKVKVLSSNETVTAEG 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01223 482 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 297 476 IPR036464 -
Vivi2g01223 482 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 34 444 - -
Vivi2g01223 482 SUPERFAMILY SET domain 36 305 IPR046341 -
Vivi2g01223 482 Pfam Rubisco LSMT substrate-binding 337 458 IPR015353 -
Vivi2g01223 482 FunFam Histone-lysine N-methyltransferase setd3 8 300 - -
Vivi2g01223 482 Gene3D set domain protein methyltransferase, domain 1 8 300 - -
Vivi2g01223 482 SMART set_7 51 293 IPR001214 GO:0005515
Vivi2g01223 482 Gene3D - 337 478 IPR036464 -
Vivi2g01223 482 CDD SET_LSMT 52 301 - -
Vivi2g01223 482 Pfam SET domain 64 287 IPR001214 GO:0005515
Vivi2g01223 482 ProSiteProfiles SET domain profile. 53 287 IPR001214 GO:0005515
Vivi2g01223 482 FunFam SET domain containing protein 323 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01223 Vivi-Chr2 50920652 50924019 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi2g01223 SET 2.6e-13 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g01223 2 50920652 50924019 Vivi2g01223 2 50920652 50924019 ECH