LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1g00215	ATGAATTCTAGAGAATTGAACATGATGAAATTTCCAATGAGTTTAATTAGCACTTGGTCTGATGATCACGATGATAATGATCAAGATCACGAACATGAAGATGATCATCACCGTCCTCGTGTTATTGTCGATGAAGTCGATTTTTTCTCGGATAGAAAGGAGAAATCATCGTCGCCGGATGATCATGTTTCCGGCGAGAATAATCAGATTTATGATCCTCATTGCAATCTCGATGCTGACCATGTCAACACCGGTTTGCAACTGCTGATTACTAATATTGGAAGTGAGTTGGAGGATGAAACTGCAATAAATGGTGGAGATAAACATGTCAAGAATCTTCAGTTTCAGTTGCAAGAAGAGCTTAGACTTAAGAATGTAGAAAATCAACGGTTGAAGGAGAAGCTAAGTGATTTGCAAATGCGTTATGTGTCTTTAATGCAACAGAATCAACGAAATGAAGCTTCGGAAAATGAGACTGTGAATGGAAAAGCTGAGGGGGGAGATTCTGTGTCTAGGAAGTTTGTGAGTGGTTCAACATCAGAAGTAGTTGATCCAAAAGTATTACATTCTCCTAATTTGGATGAAAGAAAGCGATCAAAGTCGCCTCGGAACAACAATAAAACTGATCAGAAAGAGCCTGATCCAGAATCAACAGATCAACTGGTACAAGTTTGGGAGCCAAATAAACTTCCAAGATTAAACCCTTCCAATGCCACTGATCAGGCTGCTGCTGAAGCTACTATGAGAAAAGCACGCGTCTCGGTTCGTGCCCGATCAGAAGCCCACATGATCAATGATGGCTGCCAATGGCGAAAATATGGACAGAAAATGGCAAAGGGAAACCCTTGTCCTCGAGCATATTACCGATGCACAATGGCAGTCGGTTGCCCCGTTCGCAAGCAAGTTCAGCGTTGTGCTGAGGACAAAACAATTCTGATAACAACATATGAAGGGACACACAGTCATCCACTGCCACCTGCTGCTATGCCGATGGCGTCAACCACCGCAGCCGCTGCCACCGTCTTACTATCTGGATCAATGTCAAGTGCTGATGGGGTGGTGAACCCAAATTTACTATCTAGAATTCTTCCAAACTGCTCTTCCAGCATGGCCACACTCTCAGCAACAGCACCATTTCCTACTGTCACACTAGACCTCACACATGACAACACAGATAATAACAATAACCAAACTTCCCATTCCCAATTTCATCTTGGACAGCCTCAAAACTTTGGATCAGGACAATTACCACAAGTCATTGCACAAGCACTTTATAACCAATCCAAATTCTCTGGCCTTCAACTGTCTCAAGATGTTGGAGGCTCTTCCCAATTGCACTCATCTCAACAAGCTTCATCACTCAGTGCTGCCATCACTGCTGATCCAAACTTCACCGCAGCAATCGCCGCCGCTATCTCCACCATAATTGGTGCTGGTTCTCCCAACAACAACAGCAACAACAACAATCCTAATATCCTCAACAGTGCTGCTTACAATCAGTAG	1503	0.4345	MNSRELNMMKFPMSLISTWSDDHDDNDQDHEHEDDHHRPRVIVDEVDFFSDRKEKSSSPDDHVSGENNQIYDPHCNLDADHVNTGLQLLITNIGSELEDETAINGGDKHVKNLQFQLQEELRLKNVENQRLKEKLSDLQMRYVSLMQQNQRNEASENETVNGKAEGGDSVSRKFVSGSTSEVVDPKVLHSPNLDERKRSKSPRNNNKTDQKEPDPESTDQLVQVWEPNKLPRLNPSNATDQAAAEATMRKARVSVRARSEAHMINDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDKTILITTYEGTHSHPLPPAAMPMASTTAAAATVLLSGSMSSADGVVNPNLLSRILPNCSSSMATLSATAPFPTVTLDLTHDNTDNNNNQTSHSQFHLGQPQNFGSGQLPQVIAQALYNQSKFSGLQLSQDVGGSSQLHSSQQASSLSAAITADPNFTAAIAAAISTIIGAGSPNNNSNNNNPNILNSAAYNQ	500

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1g00215	500	SUPERFAMILY	WRKY DNA-binding domain	257	325	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vivi1g00215	500	MobiDBLite	consensus disorder prediction	479	500	-	-
	Vivi1g00215	500	ProSiteProfiles	WRKY domain profile.	259	325	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vivi1g00215	500	MobiDBLite	consensus disorder prediction	188	216	-	-
	Vivi1g00215	500	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	114	488	IPR044810	GO:0003700
	Vivi1g00215	500	MobiDBLite	consensus disorder prediction	19	41	-	-
	Vivi1g00215	500	Pfam	WRKY DNA -binding domain	265	323	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vivi1g00215	500	FunFam	probable WRKY transcription factor 31	249	326	-	-
	Vivi1g00215	500	MobiDBLite	consensus disorder prediction	148	220	-	-
	Vivi1g00215	500	Coils	Coil	114	148	-	-
	Vivi1g00215	500	MobiDBLite	consensus disorder prediction	387	407	-	-
	Vivi1g00215	500	Gene3D	WRKY domain	249	326	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vivi1g00215	500	SMART	WRKY_cls	264	324	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vivi1g00215	500	MobiDBLite	consensus disorder prediction	148	164	-	-
	Vivi1g00215	500	MobiDBLite	consensus disorder prediction	20	41	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi1g00215	Vivi-Chr1	4238772	4241429	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1g00215	9	491	WRKY Transcription Factor Family	AT1G62300	47.719	2.28e-120	362

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Vivi1g00215		WRKY	8e-24	CL0274

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vivi1g00215	1	4238772	4241429	Vivi1g00215	1	4238772	4241429	ECH
	Vivi1g00215	1	4238772	4241429	Vivi7g00188	7	10941173	10946964	ECH