Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00902 ATGCTTCATCAAACAGCGCATGCTTCTGTGACTTCTGCTGCATCTGCTTCATTTCCTGTAACCACTGCAAGCTTCAATACCAATACTGTTGATGACCGGAAACCCAGCTTCTTTGAGTTTAAACCGCACAGTAGACCAAATATGGTTCCTGCAGACCCCGACAATCACGCAAGTGAAAAATCTACTCAAATAGATGGTGAAGGAAAAGCTCAACCTTTTGATTCATCATCACCATTAGTAAAAAGTGAGATAGCGGTCCCTTCAAATGAATTAAGTCTATCATCTCCTGTTCAAATTGTTAGCTCGGGAGCTAATGCCCGTGTTGAAGGTGATTTGGATGAACTGAACCCTAGGAGCAACATAGCAACTGGGCTTCAACCATCACAAGTTGACAATAGAGGTAGTGGACTTTCCGTCACAGCTGAGCGAGTATCTGATGATGGATACAACTGGAGAAAGTATGGGCAGAAACATGTTAAAGGAAGTGAATTTCCACGCAGTTATTACAAATGTACACATCCTAACTGTGAAGTTAAGAAACTATTTGAACGATCTCATGATGGGCAAATCACTGAGATAATTTACAAGGGGACACATGATCATCCGAAACCCCAGCCAAACCGGCGTTACTCAAGTGGAACTATCATGACTATGCAAGAAGAGAGGACTGATAAAGCTTCCTTTCGAGATGACAAAGGATCCAATATATGTGGCCAGGTGTCTCACCCAGCTGAGCCTGACAGTACTCCAGAGTTATCACCTGCAGCAACAAATGATGGTGATCCAGAGGGTACAGGATTTTTTTCAAATCGGAATAGTGATGAGGTTGATGATGATGATCCCTTATCAAAGCGAAGAAAAATGGAGTTTGCAAATGCTGACATTACTCCTGTAGTTAAGCCTATTAGGGAGCCACGGGTCGTTGTACAAACTCTGAGTGAGGTTGATATATTGGATGATGGTTACCGCTGGCGCAAGTATGGGCAAAAGGTGGTGAGAGGCAATCCTAACCCTAGAAGCTATTACAAATGCACAAACACGGGGTGCCCCGTTAGGAAACATGTGGAGAGGGCTTCTCATGATCCAAAAGCTGTGATAACCACATATGAGGGGAAACACAATCATGATGTGCCAACTGCAAGGAATAATAGCTGCCATGACATTGCAGGATCAGCAAGTGGTGGTGGACACACAAGAATTAGGGCAGAAGAAAGTGATACCATCAGCCTTGACCTTGGTATGGGAATCAGCCCTGCTTCGGAAAACACGCCAAACAGCCAAGGGAGAATGATGCTTCCTGAATTTGGGGACAACCATGCTCATACCAGCAACTCCAATTTCAAGTTTGTTCATACTTCAGGGGCACCTGTGTACTTTGGTGTTCTGAATAACAACTCTAACCCATATGGCTCTAGAGAAAATCCAAGTGATAGTAGTACATCTTTAAACCATTCTGCATATCCCTGCCCTCAGAACGTGGGAAGAATACTAATGGGTCCTTAA 1503 0.4385 MLHQTAHASVTSAASASFPVTTASFNTNTVDDRKPSFFEFKPHSRPNMVPADPDNHASEKSTQIDGEGKAQPFDSSSPLVKSEIAVPSNELSLSSPVQIVSSGANARVEGDLDELNPRSNIATGLQPSQVDNRGSGLSVTAERVSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQPNRRYSSGTIMTMQEERTDKASFRDDKGSNICGQVSHPAEPDSTPELSPAATNDGDPEGTGFFSNRNSDEVDDDDPLSKRRKMEFANADITPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNTGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARNNSCHDIAGSASGGGHTRIRAEESDTISLDLGMGISPASENTPNSQGRMMLPEFGDNHAHTSNSNFKFVHTSGAPVYFGVLNNNSNPYGSRENPSDSSTSLNHSAYPCPQNVGRILMGP 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00902 500 ProSiteProfiles WRKY domain profile. 140 204 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun6g00902 500 SUPERFAMILY WRKY DNA-binding domain 310 378 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun6g00902 500 MobiDBLite consensus disorder prediction 25 80 - -
Viun6g00902 500 ProSiteProfiles WRKY domain profile. 313 378 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun6g00902 500 FunFam WRKY transcription factor 33 305 371 - -
Viun6g00902 500 MobiDBLite consensus disorder prediction 223 285 - -
Viun6g00902 500 FunFam WRKY transcription factor 135 205 - -
Viun6g00902 500 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 78 417 IPR044810 GO:0003700
Viun6g00902 500 SMART WRKY_cls 318 377 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun6g00902 500 SMART WRKY_cls 145 203 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun6g00902 500 MobiDBLite consensus disorder prediction 468 500 - -
Viun6g00902 500 MobiDBLite consensus disorder prediction 64 80 - -
Viun6g00902 500 MobiDBLite consensus disorder prediction 195 214 - -
Viun6g00902 500 MobiDBLite consensus disorder prediction 468 488 - -
Viun6g00902 500 Gene3D WRKY domain 303 379 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun6g00902 500 Gene3D WRKY domain 137 205 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun6g00902 500 Pfam WRKY DNA -binding domain 146 202 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun6g00902 500 Pfam WRKY DNA -binding domain 319 375 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun6g00902 500 SUPERFAMILY WRKY DNA-binding domain 142 204 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00902 Viun-Chr6 18762533 18767196 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00902 12 500 WRKY Transcription Factor Family AT4G26640 55.020 5.40e-160 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun6g00902 WRKY 1.4e-25 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g00902 6 18762533 18767196 Viun6g00902 6 18762533 18767196 ECH