Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02842 ATGTCCAACACTCTGCAACAACAAAATCCCACTCTCCAATCCAAACGTCTCGATCCGTCTTCCCAGCATTCCCGTCCCGGCCACCGGAGATCGGTATCGGCGGGAGCTCCGTTAATCTACTCCGGCGGCTCCTCGCTGCTTCCGACTGGGAACATCTGTCCGTCAGGGAAGATCCTCAAACCGGTTCTGCCCTCGCGTGGACCGAACCGGACTGACGTGCTGGGCTCGGGCACTGTGAACTACGGCCGCGGCAGCATAGTGCGTGGTGGCTCCGGCGCCTATCCCGTGCCGGTGGCTGTGCCCGCGGCGGCGTCGCCACTCACGGTGAAGCGCGCGCTCGGAGGGTCCGATCCTGAGGAGTTGAAGAGGGTAGGGAACGAGCTGTACAGAAGCGGGAATTTCTTGGAGGCGCTGGCATTGTACGATCGCGCTGTGGCCATCTCGCCTGGGAACGCGGCGTGCCGGAGCAACCGCGCAGCGGCGCTCACGGCGCTGGGGAGGCTCGGGGAGGCCGCCCGGGAGTGCCACGAGGCTGTGAAATTGGACCCTGCTTATGCTAGAGCGCACAAGAGGCTTGCCTCTCTTTATGTAAGGTTTGGGCAGGTTGAGAATTCGCGGCGCCATTTGTGTCTGTCAGGGATTCAAGAGGATAAGTCTGAGGAGCAGAAGCTGTTGTTGCTGGAGAAACATTTGAATAGATGTGCTGATTCGCGGAAATTTGGTGATTGGAAGAGGGTGCTCAGGGAATCAGAAGCTGCTATTGCTGTTGGAGCAGATTTTTCGCCGCAGATTGTTGCTTGCAAGGCAGAAGCTTATTTAAAACTGCATCAACTTGAGGATGCTGAATCCAGTCTCTTGAACATTCCGAAGTTGGAAGGCTGTCCTGCAGCATATTCTCAAACCAAGTTCTTTGGTATGGTTGGTGAAGCCTATGTTCCTTTCGTGTCTGCTCAGGTTGAGATGGCCTTGGGGAGGTTTGAGAATGCTGTTGTGGCAGCCGAAAAGGCTAGCACTTTGGATTACAGTAATGTTGAAGTTGGTAGGATTGTAAACGTTGTAAGAATGGTGGCAAGAGCTCGTTCAAGGGGCAATGATCTTTTCAGCTCTGGCAAGTTTTCTGAAGCTTGTTCTGCTTATGGAGAGGGCCTCAAGTATGACAACTCCAACTATGTTCTATATTGCAATAGGGCAATTTGTTGGTCTAAACTTGGACTGTGGGAACAATCGGTTCAAGACTGCAACCAAGCTCTTAACATTCAACCAAATTACAACAAGGCTCTTTTCCGAAGGGCCGCATCAAATTCAAAGCTTGAAAGATGGGCAGATGTTATTAAAGATTATCAAGCCTTAAAACGCGAGCTTCCTAATGACATTGAAGTTGCTGAGTCTCTTCGTCGGGCTCAATTAGCATTAGAAAAATCTCGGCTAGTGGTGTATGGTACCAAGTTTGGAGTTGAAGTTGAAGAAATCTCAGCTTTAGACAAATTTAAACCTGCCATTGCTTCTGCTGGTGTTTCTGTAGTTTATTTCAAAGAGGCATCAAACAAACTATGTGAGGAAATATCTCCATTTATAAACACCTTGTGTGTTAGATATCCCTCTGTTAAATTTATTAAGGTGGACGCTGAGGAGTGTATTGCAATAGCAAAAGCTGAGAACATAAGAAGAGTTCCAACTTTTAAAATTTATAAAAATGGAGAAAAGGTGAAGGAGATGATCCAGCCAACACATGAGTTATTAGAGGAATCAATAAAGAGAAGTAATAGTCTGTAG 1773 0.4901 MSNTLQQQNPTLQSKRLDPSSQHSRPGHRRSVSAGAPLIYSGGSSLLPTGNICPSGKILKPVLPSRGPNRTDVLGSGTVNYGRGSIVRGGSGAYPVPVAVPAAASPLTVKRALGGSDPEELKRVGNELYRSGNFLEALALYDRAVAISPGNAACRSNRAAALTALGRLGEAARECHEAVKLDPAYARAHKRLASLYVRFGQVENSRRHLCLSGIQEDKSEEQKLLLLEKHLNRCADSRKFGDWKRVLRESEAAIAVGADFSPQIVACKAEAYLKLHQLEDAESSLLNIPKLEGCPAAYSQTKFFGMVGEAYVPFVSAQVEMALGRFENAVVAAEKASTLDYSNVEVGRIVNVVRMVARARSRGNDLFSSGKFSEACSAYGEGLKYDNSNYVLYCNRAICWSKLGLWEQSVQDCNQALNIQPNYNKALFRRAASNSKLERWADVIKDYQALKRELPNDIEVAESLRRAQLALEKSRLVVYGTKFGVEVEEISALDKFKPAIASAGVSVVYFKEASNKLCEEISPFINTLCVRYPSVKFIKVDAEECIAIAKAENIRRVPTFKIYKNGEKVKEMIQPTHELLEESIKRSNSL 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02842 590 MobiDBLite consensus disorder prediction 1 20 - -
Viun5g02842 590 SUPERFAMILY Thioredoxin-like 453 585 IPR036249 -
Viun5g02842 590 Gene3D Tetratricopeptide repeat domain 116 476 IPR011990 GO:0005515
Viun5g02842 590 ProSiteProfiles TPR repeat profile. 118 151 IPR019734 GO:0005515
Viun5g02842 590 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 13 585 IPR044534 -
Viun5g02842 590 FunFam TPR repeat-containing thioredoxin TTL4 481 588 - -
Viun5g02842 590 SUPERFAMILY TPR-like 355 468 IPR011990 GO:0005515
Viun5g02842 590 Pfam Tetratricopeptide repeat 125 183 - -
Viun5g02842 590 CDD TRX_family 496 581 - -
Viun5g02842 590 Pfam Thioredoxin 494 584 IPR013766 -
Viun5g02842 590 Gene3D Glutaredoxin 478 590 - -
Viun5g02842 590 SMART tpr_5 356 389 IPR019734 GO:0005515
Viun5g02842 590 SMART tpr_5 310 343 IPR019734 GO:0005515
Viun5g02842 590 SMART tpr_5 152 185 IPR019734 GO:0005515
Viun5g02842 590 SMART tpr_5 390 423 IPR019734 GO:0005515
Viun5g02842 590 SMART tpr_5 424 457 IPR019734 GO:0005515
Viun5g02842 590 SMART tpr_5 118 151 IPR019734 GO:0005515
Viun5g02842 590 MobiDBLite consensus disorder prediction 1 35 - -
Viun5g02842 590 SUPERFAMILY TPR-like 117 345 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02842 Viun-Chr5 39967005 39970122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02842 130 203 Glycosyltransferase AT3G04240 33.784 5.19e-06 47.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g02842 5 39967005 39970122 Viun5g02842 5 39967005 39970122 ECH
Viun11g00784 11 11161858 11165985 Viun5g02842 5 39967005 39970122 PCT