Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02321 ATGACTCTTCTCTCCAACAGCATGGACAATGGTTGCTTCTCTTCGCCACGCCATGAGGCTTTTCCAGCTGGTCTGCGAGTTCTTGTTGTTGATGATGATCCAACATGGTTGAGGATCCTTGAAAAGATGCTCAAGAAGTGTTTGTATGAAGTGACTACATGTTGTTTAGCGACAGAGGCTCTGAAAAAACTTCGAGAAAGGAAAGATGCGTATGACATAGTGATCAGCGATGTGAACATGCCTGACATGGATGGCTTCAAACTTCTTGAGCAAGTTGGACTTGAGATGGATCTTCCTGTTATTATGATGTCTGTTGATGGAGAAACCAGCAGGGTGATGAAAGGTGTTCAACATGGTGCATGTGATTATCTCCTCAAGCCTATAAGAATGAAAGAACTGAGAAACATATGGCAGCACGTCTTTAGAAAAAGGATGCATGAAGCGAAAGATTTTGATAGCCATGAGGGTTTTGAGGCCCTTCACTTGCTGATGAATGGATCAGATCAGTCCGATGATGGTAACCTGTTTGCTGTAGAAGAAATTAACTCAATAAAGAAAAGAAAAGATGCAGATAGCAAGCACGAGGATAAAGAATTTGGAGATCATTCTCCCACAAAGAAAGCTAGGGTAGTTTGGTCTGTGGATCTTCACCAGAAATTTGTCAAAGCCGTGAATCAAATTGGATTTGATAAAGTTGGTCCCAAGAAAATTCTTGATTTGATGAGTGTTCCCTGGTTAACCAGAGAAAATGTTGCTAGTCACTTGCAGAAATACAGGCTCTACTTGAGTAGGTTGCAAAAGGAAAATGATCAGAAATCTTCCTCAAGTGGAATAAAGCATTCGGATTCACCTTCAAAAGATCCAGGAAGTCTTAGTTTTCTAAACACTGCAAGCAACAAGCAACAAAATGATGTTGCCATCGACAGCTTCAGTCATTCAGATGGAAGTTTACTACTTCAGATGGATGCTCCAAGTCATGAAGGTGATCTCAAGGGAATCTTGTCAGAGCCTACAACCGAAAAAAGAAGAGCTTCACCAAAAAGTTCACAGATGAGCCTGAATCAACCTTTTTCATCTGTAGAGTCATCAGAAGCAAGCCATGCAATATTTGATTGCACCATACAAACACAGTACTCTTGGGGTGAGTTTCCAAAAGGTCCACTCAAAGAAGAACAGAAGACAGTTGTTCAATCAGAGGATAGCTTCAGCCAGTTGCCATTACATGGTACACGGCATCACATTCAGGTTGATCAATCACAATCCATTGCTTCCATTAATTCTAATCCTTCTATAACAGAAGAAGAGGTTGCTCCCAGCTTAGACACCAAACCTTTATATGCTGGTTACAAGAGTGATTATGTGAGTCCTGTGAGTTCAATGGGAACTGCAGTTGACACCTTTCCTAATCATTCCAAAAGCCTCATCGTGAATGATCAATCTTCAGAGCCCATTTTCACCTCAAATTTGGGATTGAAAACTGATGGATTTGATTTTGATTGCATTTCTGATCTGGATTTTTACCAAAGGAATCTATTATTGGGTAGTGAGGCAGCTTCTGCAGCACCTTTGGAAGAGGACCTGAATTTCTTTTTGCTGCAAACTGAATGGTACAACATGAATTTTGGGCAGCAGAATATAGATATATCAGAATGTTATGATCCAAGGCTTGTTGCTGAAGCCCCTGGCTACTTTTATGATTCTGCAGATTATTCATCGGTAGACCAAAGTCTATTCATAGCATGA 1743 0.4068 MTLLSNSMDNGCFSSPRHEAFPAGLRVLVVDDDPTWLRILEKMLKKCLYEVTTCCLATEALKKLRERKDAYDIVISDVNMPDMDGFKLLEQVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRMHEAKDFDSHEGFEALHLLMNGSDQSDDGNLFAVEEINSIKKRKDADSKHEDKEFGDHSPTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMSVPWLTRENVASHLQKYRLYLSRLQKENDQKSSSSGIKHSDSPSKDPGSLSFLNTASNKQQNDVAIDSFSHSDGSLLLQMDAPSHEGDLKGILSEPTTEKRRASPKSSQMSLNQPFSSVESSEASHAIFDCTIQTQYSWGEFPKGPLKEEQKTVVQSEDSFSQLPLHGTRHHIQVDQSQSIASINSNPSITEEEVAPSLDTKPLYAGYKSDYVSPVSSMGTAVDTFPNHSKSLIVNDQSSEPIFTSNLGLKTDGFDFDCISDLDFYQRNLLLGSEAASAAPLEEDLNFFLLQTEWYNMNFGQQNIDISECYDPRLVAEAPGYFYDSADYSSVDQSLFIA 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02321 580 MobiDBLite consensus disorder prediction 327 358 - -
Viun3g02321 580 Pfam Response regulator receiver domain 27 136 IPR001789 GO:0000160
Viun3g02321 580 ProSiteProfiles Response regulatory domain profile. 26 141 IPR001789 GO:0000160
Viun3g02321 580 Gene3D - 25 198 - -
Viun3g02321 580 MobiDBLite consensus disorder prediction 344 358 - -
Viun3g02321 580 MobiDBLite consensus disorder prediction 269 295 - -
Viun3g02321 580 SMART REC_2 25 137 IPR001789 GO:0000160
Viun3g02321 580 CDD REC_typeB_ARR-like 27 141 - -
Viun3g02321 580 SUPERFAMILY CheY-like 24 149 IPR011006 -
Viun3g02321 580 PANTHER TWO-COMPONENT RESPONSE REGULATOR 25 309 IPR045279 GO:0009736
Viun3g02321 580 Gene3D - 204 266 - -
Viun3g02321 580 Pfam Myb-like DNA-binding domain 209 259 IPR001005 -
Viun3g02321 580 NCBIfam myb-like DNA-binding domain, SHAQKYF class 207 260 IPR006447 GO:0003677
Viun3g02321 580 SUPERFAMILY Homeodomain-like 205 264 IPR009057 -
Viun3g02321 580 FunFam Two-component response regulator 203 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02321 Viun-Chr3 20692708 20697093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02321 19 273 Response Regulator Gene Family AT2G25180 53.846 2.14e-81 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Viun3g02321 Response_reg 1.3e-24 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g02321 3 20692708 20697093 Viun3g02321 3 20692708 20697093 ECH
Viun1g03412 1 41257545 41261744 Viun3g02321 3 20692708 20697093 PCT