Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00172 ATGGAGAGAGATTTCATGGGTCTCAACTCGAAAGAACCACCCACTGCGGTGAAGGAGGAGATCAACGATGATGGCTACGAAGACTCTTCTGGCTTCACAAAGGGTTCCATTGCACAGTGGTCTTTCTCGAACAAAGTATCCTCCATTCCAAATTTGATGTCTTTCAAGGCTTCTCAGGATGATAAGACTAAGAAGATGTTGTCTGGTCCCATAACAGCTGGTCTTTTATCTATCTTAAATCAAGATGCAATTGAGTCTAGTCACAAACGCTCTGCCGGTGAATCCCAGAAATCTTTCAATCGCGATGGGCAAGGTGGTCCTCATTTTTCGCTGACTCCATTTCCAGTACAACATGATGCGAATTCTGTGCATCGTCCTCATGATGTGAAGATGTTTTCGGTTCCCAATCAAGCAATTTCAGTTTCCATGGGGAATCCATTCCTGAATAATCATTTTGCAACTGGTGGCCAGAATATGAATGGCACTAGTGCGAAGCAGCCATTACTTGGGGGAATACCTGTTTCTGTGCCTCATTTAGTTATTCCCAACGCTGGTGCTGTTGCTGGAATGGTTGAATCATGTGTGAAACCATCTCCGCCTTCTGCCCAACTTACCATCTTCTATGGGGGAACTGTAAAAGTGTTTGATGATATCTCTGCTGAAAAGGCTCAAGCTATCATGTTGTTGGCTGGAAGTAGCGTAGCTATAGCTCCTAGCATGGTCCAGCCAAAAGTTCACGCGCCGGTGCCGGTCTCGGTCTCGAAGTTGGCTGCTGCCGGCGACGGTGTGGCTGCAACTCAACCTGCAAATACGCCACCCGGCTCTGGCATTTCAAGCCCTATATCTGTTTCTTCACATAGTGGAGCACAATCAGGGAGTGGCTCAACCAGCACTGATGAATTTCTTGCTGCTAAAACAACTGGAGTTCCCATCACTCCTGTTAGCATTGTGGAGCCTCCAAAGATAGTCACTGCAACCACTATGTTGGCATCAGCTGTACCTCAGGCTCGGAAAGCATCCTTGGCTAGGTTTTTAGAAAAGCGCAAAGAAAGGGTGATGAGTGCAGCACCATACAACCTGAACAGGAAGTCTGAAGAGTGTGCACCTGCATAA 1113 0.4699 MERDFMGLNSKEPPTAVKEEINDDGYEDSSGFTKGSIAQWSFSNKVSSIPNLMSFKASQDDKTKKMLSGPITAGLLSILNQDAIESSHKRSAGESQKSFNRDGQGGPHFSLTPFPVQHDANSVHRPHDVKMFSVPNQAISVSMGNPFLNNHFATGGQNMNGTSAKQPLLGGIPVSVPHLVIPNAGAVAGMVESCVKPSPPSAQLTIFYGGTVKVFDDISAEKAQAIMLLAGSSVAIAPSMVQPKVHAPVPVSVSKLAAAGDGVAATQPANTPPGSGISSPISVSSHSGAQSGSGSTSTDEFLAAKTTGVPITPVSIVEPPKIVTATTMLASAVPQARKASLARFLEKRKERVMSAAPYNLNRKSEECAPA 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00172 370 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 101 364 IPR040390 -
Viun3g00172 370 MobiDBLite consensus disorder prediction 268 299 - -
Viun3g00172 370 SMART tify_2 197 232 IPR010399 -
Viun3g00172 370 MobiDBLite consensus disorder prediction 264 299 - -
Viun3g00172 370 ProSiteProfiles Tify domain profile. 197 232 IPR010399 -
Viun3g00172 370 Pfam tify domain 198 231 IPR010399 -
Viun3g00172 370 MobiDBLite consensus disorder prediction 86 111 - -
Viun3g00172 370 Pfam Jas motif 334 358 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00172 Viun-Chr3 913912 917091 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00172 40 367 Tify Gene Family AT3G17860 35.072 4.06e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Viun3g00172 tify 1.9e-17 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00172 3 913912 917091 Viun3g00172 3 913912 917091 ECH