LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun3g00159	ATGGGCACTTCGAAGACGGTGATGTGTTCGCTGACCCACTTGCGCCCGCTAACATGCGCCGCATCTGCATCGGCGTCACGAATAGTTCCCTACCCACCCGACCTCCTAAAGTGGGTAACCAGAGAGGGCGGGTTCGTCCACCGCGCGCTGGATATAGCACAACTCGGTTCATCCAACGGACTGGGTCTAGTGGCCAAGGACCCGATTCCACGTGGCAGTGACCTAATTGTCCTTCCGCACCACCTTCCCCTGCGCTTTACCACTCTTGAACACGACCCTCTGCTGCATCACTTGGCGCGCCAAATCCCTGAGGAACTATGGGCAATGAAACTGGGTTTGAAGCTTCTGCAAGAGAGGGCAAAAGTTGGGTCCTTCTGGTGGCCGTACATTAGTAATCTCCCTGAAACATTCACCGTGCCTATTTTCTTCCCTGGGGAGGACATAAAGAACTTGCACTATGCTCCACTTCTTCATCAGGTAAACAAAAGATGCCGGTTTCTTCTTGATTTTGAGCAAGAAGTGAAGCGTGCCTTAGCAAGTGTTAAGCCAGATAGCCATCCTTTTGGTGGTCAAGAAGTAGATGCATCTTCTCTTGGATGGGCAATGTCAGCAGTCTCATCTAGAGCATTCAGGTTGTATGGTGAAAAGGATCAGAATGGGGACCGAATTCACATACCCATGATGCTCCCTCTGATTGATATGTGCAATCATAGTTTCAATCCAAATGCTAGAATTGTTCAGGAAGAAGATACCGATACCATGAAGATGCAAGTGAAGGTTGTGGCTGAGACAGCAATCAAAGAAGATGACCCTCTGTTACTTTCTTATGGCAGTTTAAACAATGATTTTTTCCTTCTTGATTATGGATTTGTGATTCACTCAAACCCTTTTGATTGTATTGAGCTCAAATATGATGGTGCTCTTTTGGATGCTGCAAGCACTGCGGCTGGAGTTTCTTCACCAAATTTCTCAGCACCTGCTCCGTGGCAGGAACTGATTTTATCTCAGTTGAATCTATCTGGAGAAACTCCAAATCTCAAGGTGAGCTTAGGTGGTGAAGAAACAGTAGATGGCCGCTTGGTGGCTGCATTGCGAGTAGTCCTTTCGAGTAATGTGGAAACTGTGCAGAAGTATGATCTCAGTACCCTCAAGTCTTTGGATGTTGAGGCTCCTCTCGGTGTTGCACATGACATAGCTGTATTTCGCACCCTAATTGCTTTGTGCGTCATTGCACTGGAACACTTTCCGACCAAAATAATGGATGATGAATCTCTGTTAAAGCAGGGTGCTTCAGGTTCAACCGAGTTAGCCATTCAGTACAGAATCCAAAAGAAATGCGTGATTATTGACGTAATGAAAAATCTCTCAAGGAGGGTAAAGCTTCTATCATCAAAGGAAACAGCTACCGCTGAAGGCTGA	1419	0.4672	MGTSKTVMCSLTHLRPLTCAASASASRIVPYPPDLLKWVTREGGFVHRALDIAQLGSSNGLGLVAKDPIPRGSDLIVLPHHLPLRFTTLEHDPLLHHLARQIPEELWAMKLGLKLLQERAKVGSFWWPYISNLPETFTVPIFFPGEDIKNLHYAPLLHQVNKRCRFLLDFEQEVKRALASVKPDSHPFGGQEVDASSLGWAMSAVSSRAFRLYGEKDQNGDRIHIPMMLPLIDMCNHSFNPNARIVQEEDTDTMKMQVKVVAETAIKEDDPLLLSYGSLNNDFFLLDYGFVIHSNPFDCIELKYDGALLDAASTAAGVSSPNFSAPAPWQELILSQLNLSGETPNLKVSLGGEETVDGRLVAALRVVLSSNVETVQKYDLSTLKSLDVEAPLGVAHDIAVFRTLIALCVIALEHFPTKIMDDESLLKQGASGSTELAIQYRIQKKCVIIDVMKNLSRRVKLLSSKETATAEG	472

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun3g00159	472	Gene3D	-	328	469	IPR036464	-
	Viun3g00159	472	Pfam	SET domain	60	277	IPR001214	GO:0005515
	Viun3g00159	472	SUPERFAMILY	RuBisCo LSMT C-terminal, substrate-binding domain	287	466	IPR036464	-
	Viun3g00159	472	FunFam	SET domain containing protein	313	466	-	-
	Viun3g00159	472	FunFam	Histone-lysine N-methyltransferase setd3	3	290	-	-
	Viun3g00159	472	SUPERFAMILY	SET domain	33	295	IPR046341	-
	Viun3g00159	472	CDD	SET_LSMT	60	291	-	-
	Viun3g00159	472	Gene3D	set domain protein methyltransferase, domain 1	12	290	-	-
	Viun3g00159	472	ProSiteProfiles	SET domain profile.	48	277	IPR001214	GO:0005515
	Viun3g00159	472	PANTHER	UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE	34	434	-	-
	Viun3g00159	472	Pfam	Rubisco LSMT substrate-binding	326	447	IPR015353	-
	Viun3g00159	472	SMART	set_7	48	283	IPR001214	GO:0005515

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Viun3g00159		SET	1e-11	No_clan

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Viun3g00159	3	836103	838974	Viun3g00159	3	836103	838974	ECH