Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00148 ATGGCTATGGCAAAAGAGAAAGAGGAAGACGAAGGGGAGGTTCAGACCTGTGGGAAGAGGTTGAAATGCACGAGGAATGATGAAGAAGATGATGATGGTGTTGAAGCTGTTGAGGAAGAAGAGAGTGAGCTTCCTCTGAAACCAGGGATTTTCTTCTACCCGACAACCCCAACTTCCTTTGTCGTCTCTGATGCTCTTGAACCTGATTTTCCGGTCATATATGTCAACAAGGTCTTTGAAATCTCCACCGGATATCGTGCTGACGAGGCCCTCGGTCGCAACTGTCGGTTCTTACAGTACAGAGATCCTCGAGCTCAGAGGAGACACCCATTGGTGGATCCTGTTGTTGTGTCCGAGATCAGAAGATGTCTCGAGGAAGGTGTTGAGTTCCAAGGTGAACTTTTGAATTTCAGAAAGGACGGCACGCCGTTGGTGAACAGACTAAGACTTGCACCAATCCACGACGATGACGGGACTGTGACACACGTAATAGGTATCCAACTATTTTCTGAGGCAAATATAGATCTGAACCGAGTCTCATATCCAGTATTCAAAGAGACTTGCAATCAGGAATTTGACAAGAATGGTAAATATTCTCCAAAGAGTGGACAATGCTTGTACAGCCAGCAGCAAGAGATGTGCGGCATTCTTCAGCTTTCTGACGAAGTATTGGCTCACAACATTTTGTCACGATTGACACCAAGGGATGTTGCATCCATCGGGTCTGTATGCAGAAGAATACGCCAATTAACAAAGAATGAGCATGTGAGGAAGATGGTATGTCAGAATGCGTGGGGCAAAGAAGTGACAGGAACATTGGAACTGATGACCAAGAAGTTAGGATGGGGTCGTCTGACTCGGGAACTCACCACCCTCGAAGCTGTTTGTTGGAGAAAACTCACAGTGGGAGGAGCAGTGGAGCCTTCACGCTGCAATTTCAGTGCTTGTGCTGCGGGAAACCGACTAGTGTTGTTCGGAGGCGAAGGGGTGGACATGCAACCGATGGATGACACTTTTGTTCTAAATCTCGACGCTAAAAATCCAGAATGGCGCAGGGTGAGTGTGAAATCATCCCCACCAGGAAGATGGGGCCACACGCTTTCATGTTTAAACGGTTCTTGGTTGGTGGTTTTTGGCGGCTGCGGAAGGCAAGGACTGCTCAATGATGTGTTCGTGCTTGATTTGGATGCTCAGCAGCCAACATGGAGGGAAGTATGCGGTGGAACGCCACCTCTTCCGAGATCATGGCATAGCTCTTGCACGATTGAAGGGTCGAAACTGGTGGTCTCCGGCGGGTGCACGGACGCCGGAGTACTTCTCAGTGACACGTATTTACTCGATCTGACAACAGAGAATCCGACATGGAGAGAGATTCCAACATCATGGGCGCCTCCATCACGGTTGGGGCACTCACTGTCGGTGTACGGAAGGACAAAGCTTCTGATGTTTGGTGGACTTGCGAAGAGTGGACACTTGCGGCTGCGATCAGGTGAGGCTTATACGATTGACTTGGAAGATGAACAGCCACAGTGGAGGCAGCTAGAGTATAGTGCATTCACGGGATTGGCAAGTCAAAGTGGTGTTGTTCCTCCTCCGAGATTGGATCATGTTGCTGTGAGCATGCCTTGTGGGAGGATCATTATATTTGGAGGTTCCATTGCGGGGCTTCACTCACCATCTCAGCTATTTCTCTTGGACCCTTCTGAAGAGAAACCATCATGGAGGATCCTGAATGTTCCAGGGCAACCACCGAAATTTGCTTGGGGTCATAGCACATGTGTGGTGGGAGGGACAAGGGTGCTGGTGTTGGGTGGACACACTGGGGAGGAGTGGATACTCAATGAGTTGCATGAGTTGTGCCTGGCTAGTCGTCAGGATTCTGACCTGTGA 1890 0.4942 MAMAKEKEEDEGEVQTCGKRLKCTRNDEEDDDGVEAVEEEESELPLKPGIFFYPTTPTSFVVSDALEPDFPVIYVNKVFEISTGYRADEALGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGVEFQGELLNFRKDGTPLVNRLRLAPIHDDDGTVTHVIGIQLFSEANIDLNRVSYPVFKETCNQEFDKNGKYSPKSGQCLYSQQQEMCGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGKEVTGTLELMTKKLGWGRLTRELTTLEAVCWRKLTVGGAVEPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDAKNPEWRRVSVKSSPPGRWGHTLSCLNGSWLVVFGGCGRQGLLNDVFVLDLDAQQPTWREVCGGTPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTYLLDLTTENPTWREIPTSWAPPSRLGHSLSVYGRTKLLMFGGLAKSGHLRLRSGEAYTIDLEDEQPQWRQLEYSAFTGLASQSGVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWILNELHELCLASRQDSDL 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00148 629 Pfam Kelch motif 534 581 IPR011498 GO:0005515
Viun3g00148 629 CDD PAS 56 166 IPR000014 -
Viun3g00148 629 Gene3D - 520 627 IPR015915 GO:0005515
Viun3g00148 629 SMART pac_2 131 172 IPR001610 -
Viun3g00148 629 Gene3D - 285 519 IPR015915 GO:0005515
Viun3g00148 629 Pfam PAS domain 66 166 IPR000014 -
Viun3g00148 629 Pfam F-box domain 216 253 IPR001810 GO:0005515
Viun3g00148 629 SUPERFAMILY Galactose oxidase, central domain 297 614 IPR011043 -
Viun3g00148 629 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 40 623 - -
Viun3g00148 629 FunFam Putative LOV domain-containing protein 287 492 - -
Viun3g00148 629 FunFam Putative LOV domain-containing protein 493 625 - -
Viun3g00148 629 Pfam Galactose oxidase, central domain 424 475 - -
Viun3g00148 629 Pfam Galactose oxidase, central domain 375 422 - -
Viun3g00148 629 SUPERFAMILY PYP-like sensor domain (PAS domain) 67 167 IPR035965 -
Viun3g00148 629 Gene3D PAS domain 53 178 - -
Viun3g00148 629 SUPERFAMILY F-box domain 209 268 IPR036047 GO:0005515
Viun3g00148 629 Pfam Galactose oxidase, central domain 310 360 - -
Viun3g00148 629 FunFam Adagio protein 1 49 178 - -
Viun3g00148 629 CDD F-box_AtADO-like 215 261 - -
Viun3g00148 629 Gene3D - 209 260 - -
Viun3g00148 629 NCBIfam PAS domain S-box protein 72 166 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00148 Viun-Chr3 757730 761466 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00148 55 168 AGC Kinase Gene Family AT5G58140 42.982 3.39e-21 96.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00148 3 757730 761466 Viun3g00148 3 757730 761466 ECH