Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00141 ATGGGCGAAGGCATAGCTGAGAGGGCGTTGAACTGTTTAGGAAAAGGCTTCGACTTGACCTCAGATTTCAGGCTCAAGTTCTGCAAAGGCGAAGAACGTTTGGTTCTTCTCAACGAAACAGAGAAACGAGTGCTCACGGTGCCGGGTTTCGGACCCATCAGAGATGTCTCCGGTGACATCAAATGCGACAAGGGCGATTGCACCCGCTACCAATCCGACATCCTCACCTTCAATCAAATGTCAGAGCTCTTCAACCAGAAGAGTTCGATCCCTGGGAGAATCCCATCTGGGTACTTCAACACCGTGTTTGGGTTTGATGAAAGTTCGTGGGCCACCGATGCTGCTAACACCAAGTGTTTGGGTATTGATGGTTATTTTATCAAACTCTTCAGTGTTCATATTGATCGGTACCCTCTTCTTCTGTCTCATCAAGTCCTTGAAGCTGTTCCTTCTTCCTGGGATCCCCCTGCACTTGCAAGATTCATCGAGAAGTTCGGGACACACATCCTTGTGGGGCTAAGCATTGGTGGCAAAGATTTAGTGTTGGTGAAGCAAGACGTGTCTTCCAGCTTGGAGGCATCAGAGCTGAAGAGGCACTTGGATGAGCTTGGAAATCAATTATTCACTGGGACATGCAGTTTCCTTCCAAGGTCTAAAGACCAAAAATACAAGGTCCCACAGGCTTTTGATGTCTTTGGTCCACAAATTGTTGCCTTCAACAGCTCTACATCAGTTTGTGCAAAAGATGGAATTAGTGTGATATGTGCAAAGAGGGGAGGGGACACCCAAGTGAGGGACCATAGTGAATGGCTTCACACAGTTCCAAAGAAACCAGATGCTGTTGATTTTAGCTTCATTCCCATCACTTCTCTTCTTAAAGGTCTTCCAGGCAAAGGCTTTCTATCTCATGCCATCAACCTCTATCTTCGATATAAGCCTCCGATGTCAGATTTACCCTACTTTCTTGACTATCAAGCACACAAGCTTTGGGCACCCGTTCACAATGATCTTCCACTATGTCCAGCCACCAACAGAACCACCTCTTCACCTTCTCTCAGTTTCAACTTGATAGGTCCCAAGCTTTATGTAAACACCTCAAAGGTAACAGTTGGTAAGAGGCCAATCACAGGGATGCGCTTGTTTCTTGAGGGAATGAAATGCAACAGATTAGCCATACACGTGCAACATCTATTGAACACTCCAATAATGCTTAAGGACAAAATACAGGAATCCTCAATATGGTCAGAAGAAATCAGTGACGAGCGTTTCTTTGAAGCAATTAATGGGAAGAAATTTTCCCATGTATGTACAGCTCCAGTAAAGTACGATCCTAGATGGAGCTCTGATAAAGATGTGGCCTTTATAGTAACAGGTGCACAACTTCATGTGAAGAAACATGAATCAAGGAGTGTCCTTCATCTGAGGTTGTTGTTCTCCCAGGTGTCTAATTGTGTGGTTGTAAAATCAAATTGGACACAGGGTTCCTCTGGGTTATCACAGAGGTCTGGCATTTTCTCATTAATAAGCACTTCAATTTCGGGTAAAGAAGAGAAAAAACCAGTTGTGGTTTTGGACTCAAGTGTGTTTCCAACAGGACCCCCGGTGCCTGTGCAAACGCAAAAGCTGTTGAAATTTGTAGACGCGTCACAGTTGTGTAAAGGTCCACAAGATAGTCCTGGCCATTGGTTGGTCACTGGGGCAAGGTTGGTCTTGGACAAGGGTAAGATATGCTTATGGGCTAAGTTCTCTTTGTTAAATACTGGTTCATGA 1770 0.4492 MGEGIAERALNCLGKGFDLTSDFRLKFCKGEERLVLLNETEKRVLTVPGFGPIRDVSGDIKCDKGDCTRYQSDILTFNQMSELFNQKSSIPGRIPSGYFNTVFGFDESSWATDAANTKCLGIDGYFIKLFSVHIDRYPLLLSHQVLEAVPSSWDPPALARFIEKFGTHILVGLSIGGKDLVLVKQDVSSSLEASELKRHLDELGNQLFTGTCSFLPRSKDQKYKVPQAFDVFGPQIVAFNSSTSVCAKDGISVICAKRGGDTQVRDHSEWLHTVPKKPDAVDFSFIPITSLLKGLPGKGFLSHAINLYLRYKPPMSDLPYFLDYQAHKLWAPVHNDLPLCPATNRTTSSPSLSFNLIGPKLYVNTSKVTVGKRPITGMRLFLEGMKCNRLAIHVQHLLNTPIMLKDKIQESSIWSEEISDERFFEAINGKKFSHVCTAPVKYDPRWSSDKDVAFIVTGAQLHVKKHESRSVLHLRLLFSQVSNCVVVKSNWTQGSSGLSQRSGIFSLISTSISGKEEKKPVVVLDSSVFPTGPPVPVQTQKLLKFVDASQLCKGPQDSPGHWLVTGARLVLDKGKICLWAKFSLLNTGS 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00141 589 SMART MACPF_8 125 310 IPR020864 -
Viun3g00141 589 ProSiteProfiles Membrane attack complex/perforin (MACPF) domain profile. 1 322 IPR020864 -
Viun3g00141 589 PANTHER MACPF DOMAIN-CONTAINING PROTEIN CAD1 5 586 IPR044663 GO:0006952|GO:0012501|GO:2000031
Viun3g00141 589 Pfam MAC/Perforin domain 99 308 IPR020864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00141 Viun-Chr3 728601 734599 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00141 3 728601 734599 Viun3g00141 3 728601 734599 ECH