LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun3g00138	ATGGTGAAATCGAACGAAAATGGTTCTGGTTCAGGTGCGGTGCCTCCGTTCTTGAAGAAGTGTTACGATATGGTGGAAGACCGGAACACGGACTCCGTTATCCGTTGGAGCGATGGCGGCGACAGTTTCGTCATATCTGACACCACGCAATTCTCCGTCACGCTACTTCCCACCTATTTCAAACACAACAATTTCTCCAGTTTTATTAGACAACTCAATATTTATGGTTTCAGGAAAATTGATACGGATTGCTGGGAATTTGCCAATGAAAATTTTGTTAGGGGTCAAAAGCAATTGTTGAAAAATATACGCAGAAGAAAACATCCACACGTTGCAGACCAACAAAAAGCATTGCCTGAGAATGACAACAGTGATGAACCATCCCAAGAGGTACCCCATCATGGCCTTTGGAAAGAAGTTGAGAATCTCAAATCTGATAAGAATTCGCTGACCCAGGAGTTGGTCAAACTCAGGCAACACCAGGAATCTGCTGAGAACAAGTTGCTGCTCCTGAGTGATCGCCTTCAAGGAATGGAAAAGCATCAGCAACAGATGCTATCATTCTTAGTCATGGTCGTGCAAAGCCCTGGGTTCCTGGTTCAATTGCTTCATCCAAAGGAAAATAATTGGCGTTTGTCTGAATCATGGAATATATTAGATCAAGATAAACAAGATGACAAGCCAATTGCTTCTGATGGGATGATAATAAAGTATAAGCCACCAGTAGGTGAAAAACTCAAGCCTGTAGTTCCCCTATCTCCAGCTTTTGAAAAACAAACAGAACCTGAGCTCTCTGCAGATGGGCTCAAAGACTTGTGCATTAGTTCTGAGTTCATGAAAGTGCTTCTGGATGAAAAATTTAGTCCATTAGAAAACCATTCTCCATTTCTCCTACCAGATTTACCTGATGACGGTTCATGGGAACAGCTTTTTCTAGGCAGTCCTTTTTCGGGAAACATTGAAGATTCTAATAAAGAAAGTGAGGAGCGCACGGATAATGGAATGGAAATAGAACCGACAATATCTGAGACCCCAAATGAAAATTTTCGAACTTTTGAATCGATGATTGTTGAGATGGAGAAAAATCGAGAATGA	1095	0.4164	MVKSNENGSGSGAVPPFLKKCYDMVEDRNTDSVIRWSDGGDSFVISDTTQFSVTLLPTYFKHNNFSSFIRQLNIYGFRKIDTDCWEFANENFVRGQKQLLKNIRRRKHPHVADQQKALPENDNSDEPSQEVPHHGLWKEVENLKSDKNSLTQELVKLRQHQESAENKLLLLSDRLQGMEKHQQQMLSFLVMVVQSPGFLVQLLHPKENNWRLSESWNILDQDKQDDKPIASDGMIIKYKPPVGEKLKPVVPLSPAFEKQTEPELSADGLKDLCISSEFMKVLLDEKFSPLENHSPFLLPDLPDDGSWEQLFLGSPFSGNIEDSNKESEERTDNGMEIEPTISETPNENFRTFESMIVEMEKNRE	364

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun3g00138	364	Gene3D	-	10	107	IPR036388	-
	Viun3g00138	364	FunFam	Heat stress transcription factor B-4	9	107	-	-
	Viun3g00138	364	Coils	Coil	140	167	-	-
	Viun3g00138	364	SMART	hsfneu3	13	106	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Viun3g00138	364	MobiDBLite	consensus disorder prediction	322	336	-	-
	Viun3g00138	364	MobiDBLite	consensus disorder prediction	315	342	-	-
	Viun3g00138	364	MobiDBLite	consensus disorder prediction	106	132	-	-
	Viun3g00138	364	Pfam	HSF-type DNA-binding	17	106	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Viun3g00138	364	ProSitePatterns	HSF-type DNA-binding domain signature.	56	80	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Viun3g00138	364	PRINTS	Heat shock factor (HSF) domain signature	17	40	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Viun3g00138	364	PRINTS	Heat shock factor (HSF) domain signature	55	67	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Viun3g00138	364	PRINTS	Heat shock factor (HSF) domain signature	68	80	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Viun3g00138	364	SUPERFAMILY	"Winged helix" DNA-binding domain	13	106	IPR036390	-
	Viun3g00138	364	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	6	226	IPR027725	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun3g00138	Viun-Chr3	713160	716312	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun3g00138	14	315	HSF	AT1G67970	50.000	2.27e-92	279

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Viun3g00138		HSF_DNA-bind	5.9e-32	CL0123

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Viun3g00138	3	713160	716312	Viun3g00138	3	713160	716312	ECH