Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00340 ATGTGGCCGGAGCTCGCTTCCCGAGGCAGGTACTTCGAATTTCGTTGCCGTTCAATTCCCGCCGCCGTCGAGTTCGCTCAGGTCTCGCCGCTGTGCACCACTCTGAGCAAGGACGGGTTCCGAATTCGAACCGTGGAGCATTTGCTTTCGGCTTTGGAGGCTTTGGGTGTTGATAACTGCAGGATTGAGATTGAGGGTTTTGATGATAAAGAGAACGACGCTGAGATTCCTATATTTGATGGGTCAGCAAGGGAATGGGTGGAAGCAGTGGAAGAAGTTGGTTTAGCGGTGGCCACTGATCTTGATGGCAATAGTGTTGAGAAAATGGCACCACATGTGAATGAACCCGTGTGTGCTTGGAGTAATGATTCTTTTGTCGCTGCATTTCCTTCTACAGCGGTTCAAATAACTTATGGCATCAACTTTCCGCAGGCACCTGCTATTGGCTGCCAGTGGTTTTCTACTTCCCCATTGGATAATTTGGTTTATTCCACACAGATAGCTCTGTCAAGAACCTTCTGCATTTATGAGGAGATTGAGCCTATGCGCAATGCTGGACTTATCAAAGGAGGTTCTCTAGAGAATGCCATTGTATGCAGTGGCAATAAAGGTTGGTTGAATCCACCTCTGCATTTCAGTGATGAACCATGTCGTCACAAGATCTTAGACCTCATTGGTGATCTCTCGATGGTTGCTCAATCTGGGAATCAAGGACTTCCAGTAGCACACATCATAGCTTACAAGGGTGGCCATGCATTGCATGCTGATTTGGCACGCCGGCTGATAGGAATGAGTTGA 798 0.4799 MWPELASRGRYFEFRCRSIPAAVEFAQVSPLCTTLSKDGFRIRTVEHLLSALEALGVDNCRIEIEGFDDKENDAEIPIFDGSAREWVEAVEEVGLAVATDLDGNSVEKMAPHVNEPVCAWSNDSFVAAFPSTAVQITYGINFPQAPAIGCQWFSTSPLDNLVYSTQIALSRTFCIYEEIEPMRNAGLIKGGSLENAIVCSGNKGWLNPPLHFSDEPCRHKILDLIGDLSMVAQSGNQGLPVAHIIAYKGGHALHADLARRLIGMS 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00340 265 Gene3D lpxc deacetylase, domain 2 112 265 IPR011334 GO:0008759|GO:0009245
Viun2g00340 265 Gene3D lpxc deacetylase, domain 1 1 101 IPR015870 GO:0008759|GO:0009245
Viun2g00340 265 SUPERFAMILY Ribosomal protein S5 domain 2-like 115 262 IPR020568 -
Viun2g00340 265 NCBIfam UDP-3-O-acyl-N-acetylglucosamine deacetylase 18 261 IPR004463 GO:0008759|GO:0009245
Viun2g00340 265 PANTHER UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE 1, MITOCHONDRIAL-RELATED 1 263 IPR004463 GO:0008759|GO:0009245
Viun2g00340 265 SUPERFAMILY Ribosomal protein S5 domain 2-like 2 96 IPR020568 -
Viun2g00340 265 Pfam UDP-3-O-acyl N-acetylglycosamine deacetylase 2 262 IPR004463 GO:0008759|GO:0009245
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00340 Viun-Chr2 6955725 6966336 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00340 3 261 Carbohydrate Esterase AT1G25054 66.795 3.66e-130 370
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g00340 2 6955725 6966336 Viun2g00340 2 6955725 6966336 ECH