Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00338 ATGTCATCACAGACAGCCGCAGCGGAGGCGCCGCTGCTCCGCAACCGCCACGACGCCGCCCGAGCACCGGCGCTAGCGCTCCTCCTCGGTCGAGCCGGCCGCCGAGGCCCCTCCATGCTGGTGCGGGAGACCGCGGCGCGCGAGCTCGAGGAGCGCCGCGCGGACTGGGGCTACTCCAAGCCGGTGGTGGCGCTCGACATGTCGTGGAACATGGCCTTCGTGGTCGTCTCGGCCGCGATGCTCGCATGCACCATCAGCGAGCGCCCGAACTCGCCGATCCGCGTGTGGATCGTCGGATACGCGCTGCAGTGCCTTGTGCATGTGGTGCTCGTCTGGCTCGAGTACCGGCGTCGTAGCCGGAGGGACTCGCGCCGCGGCCAGGGGACGCAGGACGTGGAGAGCCAGGCCGGCAGTGACAACGAAGAGGGCGGAAACGACAGCGACAGCGACGTGGATGGGAGCTCTGGCAATTCGTCTCGCTCCCGGTTCACAAAACGATGTGAATCAATAAATACAGGGGTTTCATTCCTTTGGTGGATAGTGGGGTTTTACTGGGTTGTCTCTGGTGGTGATGTACTTCTGCAAGATGCCCCACGATTGTACTGGTTATCTGTTGTCTTTCTGGCATTTGATGTCTTTTTTGCCATCTTTTGTGTTGTCTTGGCGTGCTTGATTGGTATTGCGCTTTGTTGTTGTTTGCCCTGCATCATTGCTATTCTCTATGCGGTTGCAGGACAGGAAGGTGCGTCAGAAGCAGATCTTAGCATACTTCCAAAATATAGATTTCGAATACTAAGCAATGAGGATAAGCCCAGTGGTGGAGCTGGATCAATGGTTCCTATAGAAACCAGCAGTGCTTACTTGGCAAATGAACGACTGCTTTTACCAGAGGATGCGGAATGCTGTATTTGCCTCTGTTCATACGAAGATGGGGCAGAGCTCCATGCTCTTCCCTGCAACCATCATTTCCATTCTTCATGCATAGTGAAATGGCTGAAGATGAATGCTACTTGTCCTCTCTGCAAGTACAATATTCTCAAGGGAAACGAACAAGTGTGA 1059 0.5571 MSSQTAAAEAPLLRNRHDAARAPALALLLGRAGRRGPSMLVRETAARELEERRADWGYSKPVVALDMSWNMAFVVVSAAMLACTISERPNSPIRVWIVGYALQCLVHVVLVWLEYRRRSRRDSRRGQGTQDVESQAGSDNEEGGNDSDSDVDGSSGNSSRSRFTKRCESINTGVSFLWWIVGFYWVVSGGDVLLQDAPRLYWLSVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFRILSNEDKPSGGAGSMVPIETSSAYLANERLLLPEDAECCICLCSYEDGAELHALPCNHHFHSSCIVKWLKMNATCPLCKYNILKGNEQV 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00338 352 ProSiteProfiles Zinc finger RING-type profile. 301 342 IPR001841 -
Viun2g00338 352 PANTHER TARGET OF ERK KINASE MPK-1 32 350 - -
Viun2g00338 352 SUPERFAMILY RING/U-box 289 346 - -
Viun2g00338 352 CDD RING-H2_PA-TM-RING 300 342 - -
Viun2g00338 352 MobiDBLite consensus disorder prediction 124 162 - -
Viun2g00338 352 Pfam Ring finger domain 300 342 IPR001841 -
Viun2g00338 352 FunFam E3 ubiquitin protein ligase RIE1 281 349 - -
Viun2g00338 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 347 IPR013083 -
Viun2g00338 352 SMART ring_2 301 341 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00338 Viun-Chr2 6921383 6932652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00338 2 351 C3H Transcription Factor Family AT1G68070 67.330 8.11e-174 485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g00338 2 6921383 6932652 Viun2g00338 2 6921383 6932652 ECH