Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00325 ATGGCTCCGTCGCGTTCCGCCGCCGACGCATGCAAGGGCGGCACGGCGGAGTTCCCGGCGGGGTTAAGGGTTTTGGTCGTTGACGATGACGCCACCACGCTGAGGATTATAGAGCAAATGTCAATTCGATGCCGTTACCGCGTTACCACATGCACCGAGGCTACTGTGGCTTTGAATCTTTTGCGGGAAAGGAAAGGTTGTTTTGATGTGGTACTGAGTGATGTTCATATGCCAGACATGGATGGCTATAAGCTCCTTGAACATGTTGGGCTGGAAATGGACCTTCCTGTAATTATGATGTCTGGTGATAGTACAACAAGTGCTGTCATGAAGGGAATTAGACACGGGGCGTGTGATTATTTGATTAAGCCTGTACGTGAGGAAGAACTGAGGAATATATGGCAACATGTTGTTAGGAAAATCTGGAATGAAAATAAAGAACATGATAATTCTGGCAGCATGGAAGACAGTGATTGGAATATACGGGGAAATGATGATATTGAATATACTTCTGTTGCTGATGAAGCAGAAGTAGTTAAAGCACCAAAAAAGAGGAGCAGTTTAAAAGAAGAAGATATTGAATTGGAGAGTGATGATCCAGCCACATCTAAGAAGCCTCGTGTAGTGTGGTCAGTAGAACTGCACCAACAATTTGTCAGTGCTGTGAATCAACTTGGGCTTGATAAGGCTGTGCCAAAGAGAATACTTGAATTGATGAATGTCCCTGGTTTGACTAGAGAAAATGTTGCCAGTCATTTGCAGAAATTTAGACTTTACTTGAAGCGATTAAGTGGAGTGGCACAGCAACAGAATGGGATGCTAAATGGAGTTCCTGGGACTATAGAATCCAAGCTGAGCGCTACTGGAAGATTTGACATACAAGCTTTGGCTGCTGCTGGCCATGTTCCGCCTGAAACACTTGCAGCCCTTCATGCTGAGCTCTTAGGTCGCCCTGCAACTAACATAATGTCTACAGCAGACCAGGCTACATTGCTGCAAGCATCCATTGGGCTAAAACATTCCCATGCTGAACATGCTGTGGCGTATGGTCAGCCTTTTGTAAAGTGTCCTTCCAATATTGGCAAGGATTTTCCTCTCTCTTTCTTAACTGCAAACGACGTGTCGACAGGATATGGTGCATGGCCATCATCTAATAATACAATGGGTTCAGTGAGACCCAATAATAGCGTTGAAAGAGTGGGTACTCAGAATAACAACATACTGATGGATATATTAGATCACCAACAAAGGCAGCAACCCCAGCAAAAACAACAGCAGCACCACCAGCAACAGGAGCCTCTGATACATGATCAAAGTTGTTCAATCAATGTTCAACCATCTTGCTTGGTGGTTCCATCTCAATCCTGTGACACTCTCCAGGCAGTAAATAGTTCTGCATCTGTCCATCAGAATTGCAGTTTTGGCAGGAATGCCATTATTGATTATAGTTTATTGTCACAGAAATCAAATAATTTAGTTAGTGCAGCTCAATTTTCCGGTGGGGACACAAAAGCTCGATCTGTTCTTTATACACATACTACGCCCTCCACATGTTCCATGAGTTCCATCAATGGCAGTATTCGGCAGCTTCAAAACTCAAATTTGACATTTGGTGGTGCAAGACCTTTTCCTAGCCCTTTGCCCATGTCTGATAGACAAGATCCCTATGGTTTGAAATCAGGCGATTCATTTGATCAAGTATGCCTTAGGAATATTGGGTTTATTGGCAAAGGTACTTGCGTTCCAAATAGGTTTGTTCAAAATGAAATGGAATCACCTGTCAGTGATTTTAGTCAAATGAAAGTCAATGTAGATAGCACTGACAACACACTGAAGGAGGAGCCAAATTTTATAAATATACAAAAAGTGAGTCGCCCAATCGTAGAAAGATATCAATCTTGTGATCATTCAAGTGTGTTTACTGAATAG 1929 0.4303 MAPSRSAADACKGGTAEFPAGLRVLVVDDDATTLRIIEQMSIRCRYRVTTCTEATVALNLLRERKGCFDVVLSDVHMPDMDGYKLLEHVGLEMDLPVIMMSGDSTTSAVMKGIRHGACDYLIKPVREEELRNIWQHVVRKIWNENKEHDNSGSMEDSDWNIRGNDDIEYTSVADEAEVVKAPKKRSSLKEEDIELESDDPATSKKPRVVWSVELHQQFVSAVNQLGLDKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRLSGVAQQQNGMLNGVPGTIESKLSATGRFDIQALAAAGHVPPETLAALHAELLGRPATNIMSTADQATLLQASIGLKHSHAEHAVAYGQPFVKCPSNIGKDFPLSFLTANDVSTGYGAWPSSNNTMGSVRPNNSVERVGTQNNNILMDILDHQQRQQPQQKQQQHHQQQEPLIHDQSCSINVQPSCLVVPSQSCDTLQAVNSSASVHQNCSFGRNAIIDYSLLSQKSNNLVSAAQFSGGDTKARSVLYTHTTPSTCSMSSINGSIRQLQNSNLTFGGARPFPSPLPMSDRQDPYGLKSGDSFDQVCLRNIGFIGKGTCVPNRFVQNEMESPVSDFSQMKVNVDSTDNTLKEEPNFINIQKVSRPIVERYQSCDHSSVFTE 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00325 642 ProSiteProfiles Response regulatory domain profile. 23 138 IPR001789 GO:0000160
Viun2g00325 642 Pfam Response regulator receiver domain 24 133 IPR001789 GO:0000160
Viun2g00325 642 CDD REC_typeB_ARR-like 24 138 - -
Viun2g00325 642 MobiDBLite consensus disorder prediction 415 434 - -
Viun2g00325 642 Gene3D - 22 156 - -
Viun2g00325 642 FunFam Two-component response regulator 201 264 - -
Viun2g00325 642 Pfam Myb-like DNA-binding domain 207 255 IPR001005 -
Viun2g00325 642 SUPERFAMILY Homeodomain-like 202 262 IPR009057 -
Viun2g00325 642 PANTHER TWO-COMPONENT RESPONSE REGULATOR 22 408 IPR045279 GO:0009736
Viun2g00325 642 SMART REC_2 22 134 IPR001789 GO:0000160
Viun2g00325 642 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 202 261 IPR017930 -
Viun2g00325 642 MobiDBLite consensus disorder prediction 180 201 - -
Viun2g00325 642 SUPERFAMILY CheY-like 21 145 IPR011006 -
Viun2g00325 642 FunFam Two-component response regulator 22 159 - -
Viun2g00325 642 NCBIfam myb-like DNA-binding domain, SHAQKYF class 205 258 IPR006447 GO:0003677
Viun2g00325 642 Gene3D - 201 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00325 Viun-Chr2 6446577 6453289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00325 56 319 Response Regulator Gene Family AT3G16857 54.514 5.31e-90 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Viun2g00325 Response_reg 1.7e-21 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g00325 2 6446577 6453289 Viun2g00325 2 6446577 6453289 ECH