Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00286 ATGATTGGAGGCAAAGATCTTGTTCCCAATGGCGTGGACACCGAGGGAGAGAACTCAAGGAGCAAGGTGCAGCAGCATCAGCATCAGCATCGTGATTTTTCTCAGGGCAAGGAACGGCCACAAGAGAAAAAGCAAAGTTACCCGGAGAAGAAGAAGGTTGGTGTTGACGAGTTTCAGTCACCACCCTCAAAATTTGCCTCTTCTGGGTCGCAAGAGTTGACCCTCAGCTACCTCTGCGACAACCCAAAATTGAGTCTTGTCGAGAGGGAGGTCGGCGGCAGAAGCTCGGTGAAGGGCAAAGAAGTTGTGGTTTATGGGAATTCAGATCAAGATCAAGACGAGTTAAGGTTTAAATCGTCTCTGGAAGAGGTGACAGCATTTAGTGCGCGACAATACTTCGACCAGGATTGTCTTCGGAGGAAGGTGGCTGTTGGGAACCAAAAGCAAGATCAGGATGAGAAATGGGTGGAGAGGGATTTCTTGAGTTTGAGTGAGTCAAGGGAGAATTCTTCGAAGAGATCCATTGATGAAGAGTGTGAGAGGGAGAGGAGTGGTGGCAGCAAGAAGCAGAAGCTTGAGACTCTCAGTCTCTCCCTTGCTTTGCCTGATGTGTCGCTCTCTCTCACAGCCTCAAACGCTTTGCAAAATGGTGAGCAACTCGTTAAACCAAAGCCTGGTATGCCATCCACAAGGCCCACAACTACCATCAATTCATGTTCAAATGATTACACTGCAGCTTCTATGTCTCAATCCTACTCTCACCCTTTCTCACACAACCCAAGTTGCTCAATCACCCGAAATTCAACCGACAATTTTGAGTATTCGCACAGCAAAGATGATCAAATTTGGCATTGTGGGGAGGGGACTAATGGGTCAGTTCATAGCAGGTTCAAGCCAATTGGAGATGGGGTTGCTTTGGCCAATCATTCCTTTATGCAAGGGAACAGTCACTATAAGGCTACTAGCTCGGATAACCAGTCTTTTTTCCCTTCGGAATTGCCTGCAAGAGTGAGATTTGAAGCTCAGTCTGAGGGCTCCAGGGGAAAGAATTCTGAGAATCTGAGAGGCTTGGAAGGTGTGGATGGTGGGAAGATGATGAAGTTTTCTAGATCAGAGAGAATTCTAAGGGAAATTGTGTCTGAGTCTATCCCAACAATGGCTTTGCAATTTCAGGAGTTCACTGATGAAGTCATAACTTCAATTAAGGAACACTTGAAAGGTCTCATTGATACACCAGAGAAGAAAGGGGAATTGATGAGCCTCCAGAATCGGCTTGGTCGAAGATCTGACCTCACCAGAGAGAGTCTTTCCAAGTGTCATAAAGGGCAGCTAGAGATTTTGACTGCTATCAAGATGGGGCTAGCGAGTTTCTTGTCTGGTAAGTTCCAAATCTTGGAGATGGTGGAGGTTTTCTTGTATATGAGATGTAGAAATGTGAACTGCAAGAGCTTGCTGCCCGTTGAAGACTGTGACTGCAAGATGTGCTCAGGAAATAAGGGGTTTTGCAGTTCTTGCATGTGTCCTGTTTGTATGAGCTTTGATTGTGCAAGTAATACTTGTAGTTGGGTTGGTTGTGATGTTTGTTCACACTGGTGTCATGCTACCTGTGCCATTCAGAAGAATCTAATCAAACCTGGGCCTATCTTGAAGGGTCCTTCTGGGACCTCTGAGATGCAGTTTCATTGTATTGGCTGTGGACATACTTCAGAAATGTATGGCTTTGTTAAAGAGGTCTTTCTGTGTTGTGCCAAGGATTGGGGCCTAGAAACTTTGATGAAGGAGCTTGATTGTGTGAGGAGGATTTTTCAGGGAAGTGAAGATCGCAAAGGGAAGGAATTGCATTTTAAGATGGACGATATGCTGTCAAAACTTCAAGCTAAACTGGTTTCTCCTTCGGATGCCTGCAACTTTATCATACAGTTTTTCAGCTACACTGATGGCATGTCAGATTTCCCAGCTTCTGGTACATCCACAAAGGATCTGTCAAAATCTAAGGCTAACCTTACAGTAGACAGCACAACATCATCTCTTCCACAATCTACTTCTCTAATTCCAAAATACCCTTATGACATGAGCTTCACTAGGTCAAATGATCTTCAACAGAAAGACCTGAAAACCTCCCTCTTGAGTGAGCAGAAAAAGGAGTCTGATCTGCATCTTGAGGCTTTACTAAGGAAAGGAGGAGGGCTTGAAAGCTTGGAGAGCATCATTCGGATAAAAGAGGCCGAAGCAGGAATGTTCCAGAGCAAGGCAGATGAGGCAAGGAGAGAGGCTGAGGGATTCCAGAAGATGATCAAGACAAAGGCTGCACAGATGGAAGAGGAGTATGCAGAAAGGCTTGGCAAGCTTTGCTTGCATGAGGCAGAGGAAAGGAGGAAGAAGAAATTTGAGGAACTCAATGTGTTGCAAAACTCACACTATGATTACTTCAACATGAAAAGCAGAATGCAAGATGAGATTCATGGCTTGTTGAAGAGAATGGAAGCAACAAAGCAGCAATGGGTCTAA 2508 0.4514 MIGGKDLVPNGVDTEGENSRSKVQQHQHQHRDFSQGKERPQEKKQSYPEKKKVGVDEFQSPPSKFASSGSQELTLSYLCDNPKLSLVEREVGGRSSVKGKEVVVYGNSDQDQDELRFKSSLEEVTAFSARQYFDQDCLRRKVAVGNQKQDQDEKWVERDFLSLSESRENSSKRSIDEECERERSGGSKKQKLETLSLSLALPDVSLSLTASNALQNGEQLVKPKPGMPSTRPTTTINSCSNDYTAASMSQSYSHPFSHNPSCSITRNSTDNFEYSHSKDDQIWHCGEGTNGSVHSRFKPIGDGVALANHSFMQGNSHYKATSSDNQSFFPSELPARVRFEAQSEGSRGKNSENLRGLEGVDGGKMMKFSRSERILREIVSESIPTMALQFQEFTDEVITSIKEHLKGLIDTPEKKGELMSLQNRLGRRSDLTRESLSKCHKGQLEILTAIKMGLASFLSGKFQILEMVEVFLYMRCRNVNCKSLLPVEDCDCKMCSGNKGFCSSCMCPVCMSFDCASNTCSWVGCDVCSHWCHATCAIQKNLIKPGPILKGPSGTSEMQFHCIGCGHTSEMYGFVKEVFLCCAKDWGLETLMKELDCVRRIFQGSEDRKGKELHFKMDDMLSKLQAKLVSPSDACNFIIQFFSYTDGMSDFPASGTSTKDLSKSKANLTVDSTTSSLPQSTSLIPKYPYDMSFTRSNDLQQKDLKTSLLSEQKKESDLHLEALLRKGGGLESLESIIRIKEAEAGMFQSKADEARREAEGFQKMIKTKAAQMEEEYAERLGKLCLHEAEERRKKKFEELNVLQNSHYDYFNMKSRMQDEIHGLLKRMEATKQQWV 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00286 835 Coils Coil 813 833 - -
Viun2g00286 835 Pfam Coiled-coil region of Oberon 696 824 IPR032535 -
Viun2g00286 835 CDD PHD_OBE1_like 506 565 IPR047578 -
Viun2g00286 835 Pfam PHD - plant homeodomain finger protein 476 600 IPR032881 -
Viun2g00286 835 Coils Coil 785 805 - -
Viun2g00286 835 MobiDBLite consensus disorder prediction 171 189 - -
Viun2g00286 835 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 770 792 IPR004082 -
Viun2g00286 835 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 586 605 IPR004082 -
Viun2g00286 835 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 467 488 IPR004082 -
Viun2g00286 835 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 731 751 IPR004082 -
Viun2g00286 835 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 428 443 IPR004082 -
Viun2g00286 835 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 389 411 IPR004082 -
Viun2g00286 835 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 513 533 IPR004082 -
Viun2g00286 835 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 20 834 IPR004082 -
Viun2g00286 835 MobiDBLite consensus disorder prediction 171 191 - -
Viun2g00286 835 MobiDBLite consensus disorder prediction 19 57 - -
Viun2g00286 835 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00286 Viun-Chr2 5773873 5777931 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00286 476 628 PHD Gene Family AT5G57380 22.876 1.30e-07 53.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g00286 2 5773873 5777931 Viun2g00286 2 5773873 5777931 ECH