Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03501 ATGGCTTCTACTTCTTCTACTGGTACTAAGTTTTATGCCCTTCTTCTGGTGGTGGTGGTGGCCACCTCCATGGTGGCTAAATGTGGTGCTAACTTCAACCAAGACTTTGATCTCACATGGGGTGACCACCGTGCTAAGATATTCGGCGGTGGCCAGCTTCTATCTCTTTCCCTCGACAAAGTCTCTGGCTCTGGCTTCCAATCCAAGAAAGAGTACTTATTTGGGAGGATCGATATGCAGCTTAAACTCGTCGCCGGAAACTCCGCCGGAACTGTCACTGCTTACTACTTGTCATCTCAGGGACCAACTCACGACGAGATTGATTTTGAATTCTTGGGAAACGTGAGCGGCGACCCCTACATTCTCCACACAAACGTGTTCACCCAAGGCAAGGGAAACAGGGAGCAACAGTTCTACCTCTGGTTCGACCCCACCAGAAACTTCCACACTTACTCCATCATCTGGAAGCCCCAACACATTATCTTCTTGGTGGATAACATTCCCATAAGGGTGTTCAAGAATGCCGAGGTTGCCGGTGTTCCTTTCCCGAAGAACCAACCCATGAGAATCTATTCTAGCCTGTGGAATGCCGATGACTGGGCAACTAGAGGTGGCTTGGTGAAAACTGATTGGTCGAAGGCACCATTTACGGCGTACTACCGCAATTTCAAAGCCACGGAGTTCTCGGTGTCTTCCAATTCATTCTCTGATGCTGCATTGCAGAGCACGGAGCTCGACGCTTATGGCAGAAGAAGACTTAGATGGGTTCAAAAGTACTTCATGATCTATAACTACTGCAACGATCTTAAGCGATTCCCACAAGGCCTTCCTGCTGAGTGCAAGCGCTGA 849 0.49 MASTSSTGTKFYALLLVVVVATSMVAKCGANFNQDFDLTWGDHRAKIFGGGQLLSLSLDKVSGSGFQSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGDPYILHTNVFTQGKGNREQQFYLWFDPTRNFHTYSIIWKPQHIIFLVDNIPIRVFKNAEVAGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRNFKATEFSVSSNSFSDAALQSTELDAYGRRRLRWVQKYFMIYNYCNDLKRFPQGLPAECKR 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03501 282 Pfam Glycosyl hydrolases family 16 33 213 IPR000757 GO:0004553|GO:0005975
Viun1g03501 282 CDD GH16_XET 29 280 IPR016455 GO:0010411|GO:0016762|GO:0042546
Viun1g03501 282 PIRSF EndGlu_transf 1 282 IPR016455 GO:0010411|GO:0016762|GO:0042546
Viun1g03501 282 ProSitePatterns Glycosyl hydrolases family 16 active sites. 106 116 IPR008263 GO:0004553|GO:0005975
Viun1g03501 282 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 27 280 IPR044791 GO:0004553
Viun1g03501 282 SUPERFAMILY Concanavalin A-like lectins/glucanases 30 281 IPR013320 -
Viun1g03501 282 FunFam Xyloglucan endotransglucosylase/hydrolase 18 282 - -
Viun1g03501 282 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 242 280 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Viun1g03501 282 Gene3D - 17 282 - -
Viun1g03501 282 PRINTS Glycosyl hydrolase family 16 signature 140 157 IPR008264 GO:0004553|GO:0005975
Viun1g03501 282 PRINTS Glycosyl hydrolase family 16 signature 64 82 IPR008264 GO:0004553|GO:0005975
Viun1g03501 282 PRINTS Glycosyl hydrolase family 16 signature 122 135 IPR008264 GO:0004553|GO:0005975
Viun1g03501 282 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 26 220 IPR000757 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03501 Viun-Chr1 41724571 41726071 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03501 14 282 Glycoside Hydrolase AT3G23730 74.643 6.71e-163 452
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03501 1 41724571 41726071 Viun1g03501 1 41724571 41726071 ECH