Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03412 ATGGATAATGGGTGTTTCTCTTCCCCTCGACGTGATTTCCCTGCTGGTCTGCGAGTTCTTGTTGTGGATGATGATCCTACGTGGCTCAAGATCCTTGAGAAGATGCTCAAGAAGTGCAATTATGAAGTGACTACATGCTGTTTAGCAAGGCATGCTCTAAACTTGCTTCGTGAAAGGAAGGATGGATATGATATAGTGATCAGCGATGTAAACATGCCTGACATGGATGGTTTTAAACTTCTTGAGCATGTTGGGCTTGAGATGGATCTTCCTGTGATTATGATGTCTGTGGATGGGGAAACAAGCAGGGTCATGAAAGGTGTTCAACATGGAGCATGTGATTATCTCCTTAAGCCTATAAGGATGAAAGAACTGCGAAATATATGGCAGCATGTCTTTAGAAAAAGGATACACGAGGCAAAAGAGTTTGAAAGCTTTGAGAGTTTTGAGAGCATGATGAGAAATGGATCAGAGCTATCAGATGAGGGGAACTTGTTTGCTGTAGAAGATGTGACCTCAACAAAGAAAAGAAAAGATGCAGATAACAAACACGATGACAAAGAATGTATGGATCCATCATCTACCAAGAAAGCTAGAGTAGTATGGTCTGTAGATCTTCATCAGAAGTTTGTTAAAGCTGTGAATCAGATTGGATTTGATAAAGTTGGGCCGAAGAAAATACTGGATCTGATGAATGTTCCATGGCTGACTAGAGAGAATGTTGCCAGCCATTTGCAGAAATACCGGCTTTATTTGATTAGGATTCAGAAAGAAAACGATCGAAGATCTTCCTCGAGTGGTATGAAGCATTCAGATTTTCCTTCAAAAGATCTGGGAAGTTTTGGATTTCAAAACCCAGTAAACAAGCAACAGAATGATGTTTCAACTGACAGCTACAATTATTCGGATGGATCATTACAGCTTCCGACCGTGGAAAATAAAAGTCATGAAGGTGATAAGGGATCTGTTTCACAGTTCACCATAGCAAAAAAAGGAAGGCCTTTGACTGGTAACGTTTCCGATTCAAATATGAGAGAGAGTTCAAGAGTTGGCCTCAATCAAACTTTTGCCCAGTCAGAAGGAAACCATGCAGTGTTTGATTGCTCCATGCCAACACAGTACTCTTGGACTGAAGTTCCACCCATGCAACTCAAAGAAGAACACAAGTCACTTGTTCATTTGAAAGATAGCTTCAATCAGATGCCATTACACGGTAAGCAGCATCACATCCAAGTTGATCAATCACAGTCAGTTGCTTCAATTAGTTCAGCTCCCTCTATAACGGAGGAAGAGGTTCCTGCTTGTATAGAAGCAAAACCTTTGTTTTCAGATTTCAAGAATGATCAATCCAGTTCTGTGAATTCAATAGGGAATGCAGTTGACACCTTTCCAATTCAACCAGGAAGTCTTGTTATGAATGCTCAATCTTTAGAACCCATTTCAACTACAAATTCAGGATTGAAAACACATGGATATAATAACCTCAGTTGCATTTCTGATCTGGAAATTTACCAAAGAAACCTTCTTTTGGGAGGCGAGGCAGCTTCTGCACCTTTGGATGAGGACTTGCATTTCCAGTGGCTACAAGGTGAATGTTATAATATGAACTTTGGTCTGCAGAATATAGGAATGCCAGAATATTATGATCCAGGACTTATACCAGAAGCTCCAATTCACTTATATGATTCAGGCGATTACTCGGTTATAGATCAAGGTCTGTTCATAGCATGA 1731 0.4027 MDNGCFSSPRRDFPAGLRVLVVDDDPTWLKILEKMLKKCNYEVTTCCLARHALNLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEAKEFESFESFESMMRNGSELSDEGNLFAVEDVTSTKKRKDADNKHDDKECMDPSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLIRIQKENDRRSSSSGMKHSDFPSKDLGSFGFQNPVNKQQNDVSTDSYNYSDGSLQLPTVENKSHEGDKGSVSQFTIAKKGRPLTGNVSDSNMRESSRVGLNQTFAQSEGNHAVFDCSMPTQYSWTEVPPMQLKEEHKSLVHLKDSFNQMPLHGKQHHIQVDQSQSVASISSAPSITEEEVPACIEAKPLFSDFKNDQSSSVNSIGNAVDTFPIQPGSLVMNAQSLEPISTTNSGLKTHGYNNLSCISDLEIYQRNLLLGGEAASAPLDEDLHFQWLQGECYNMNFGLQNIGMPEYYDPGLIPEAPIHLYDSGDYSVIDQGLFIA 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03412 576 NCBIfam myb-like DNA-binding domain, SHAQKYF class 197 250 IPR006447 GO:0003677
Viun1g03412 576 MobiDBLite consensus disorder prediction 259 345 - -
Viun1g03412 576 SUPERFAMILY CheY-like 16 145 IPR011006 -
Viun1g03412 576 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 319 IPR045279 GO:0009736
Viun1g03412 576 MobiDBLite consensus disorder prediction 281 312 - -
Viun1g03412 576 CDD REC_typeB_ARR-like 19 133 - -
Viun1g03412 576 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Viun1g03412 576 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Viun1g03412 576 Gene3D - 193 256 - -
Viun1g03412 576 SMART REC_2 17 129 IPR001789 GO:0000160
Viun1g03412 576 FunFam Two-component response regulator 17 202 - -
Viun1g03412 576 Gene3D - 17 190 - -
Viun1g03412 576 SUPERFAMILY Homeodomain-like 195 252 IPR009057 -
Viun1g03412 576 Pfam Myb-like DNA-binding domain 199 249 IPR001005 -
Viun1g03412 576 FunFam Two-component response regulator 193 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03412 Viun-Chr1 41257545 41261744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03412 13 255 Response Regulator Gene Family AT2G25180 57.087 3.04e-82 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Viun1g03412 Response_reg 1.5e-24 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03412 1 41257545 41261744 Viun1g03412 1 41257545 41261744 ECH
Viun1g03412 1 41257545 41261744 Viun3g02321 3 20692708 20697093 PCT