Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00815 ATGATGAAGCCATCCATGCTCAGATCTCTCCACTCCGCCGCAACCCGCGGCGCCTCCCACTTGTCCCGCCGTGGCTACGCCTCTGAGCCCGGGCCAGAACGCAAGGTCGCCGTTCTCGGTGCCGCCGGCGGGATCGGCCAACCCCTTTCCCTTCTAATGAAGCTTAATCCCCTCGTTTCTAGTCTCTCCCTCTACGATATCGCCGGAACCCCCGGCGTCGCCGCCGACGTCAGCCACATTAACACCAGATCTAAGGTTGCAGGGTACCAAGGTGAGGCAGAGCTTGGCAAAGCTTTGGAGGGTGCAGATGTTGTTATAATTCCTGCTGGTGTACCCAGAAAACCTGGAATGACTCGGGATGATCTTTTTAACATCAATGCTGGCATTGTCAAGGCACTTTGTACTGCTATTTCTAAATACTGCCCCCATGCCCTTGTTAACATGATAAGCAATCCTGTGAACTCCACTGTTCCTATTGCTGCTGAAGTTTTCAAGAAAGCTGGAACATATGATGAGAAGAGATTGTTTGGTGTAACCACCCTTGATGTTGTCAGGGCAAAAACTTTCTATGCTGGGAAAGCCAATGTTCCAGTTGATGGTGTCAATGTACCTGTTGTGGGTGGCCATGCAGGCATTACCATTCTACCCCTATTTTCTCAAGCTACACCAAAAGCCAATCTTGATGATGATGTCATCAAGGCTCTTACAAAGAGGACTCAAGATGGAGGAACAGAAGTTGTGGAAGCTAAGGCTGGAAAGGGTTCTGCAACTTTGTCAATGGCCTATGCTGGTGCCCTTTTCGCTGATGCTTGTCTCAAGGGCCTTAACGGGGTCCCAGATGTTGTTGAGTGCTCATTTGTGCAATCCACTATCACTGAACTTCCCTTCTTTGCTTCCAAGGTGAGGCTTGGGAAGAACGGTGTGGAGGAAGTTCTGGGCTTGGGACCTCTCTCTGATTTTGAGAAACAAGGCCTAGAGAGCCTTAAGGGTGAACTTAAATCATCAATTGAGAAGGGAATCAAGTTTGCCAACCAGTAA 1038 0.4971 MMKPSMLRSLHSAATRGASHLSRRGYASEPGPERKVAVLGAAGGIGQPLSLLMKLNPLVSSLSLYDIAGTPGVAADVSHINTRSKVAGYQGEAELGKALEGADVVIIPAGVPRKPGMTRDDLFNINAGIVKALCTAISKYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKRLFGVTTLDVVRAKTFYAGKANVPVDGVNVPVVGGHAGITILPLFSQATPKANLDDDVIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVVECSFVQSTITELPFFASKVRLGKNGVEEVLGLGPLSDFEKQGLESLKGELKSSIEKGIKFANQ 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00815 345 NCBIfam malate dehydrogenase 35 344 IPR010097 GO:0006099|GO:0030060
Viun11g00815 345 ProSitePatterns Malate dehydrogenase active site signature. 178 190 IPR001252 GO:0006108|GO:0016615
Viun11g00815 345 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 179 342 IPR022383 GO:0016616
Viun11g00815 345 CDD MDH_glyoxysomal_mitochondrial 35 343 IPR010097 GO:0006099|GO:0030060
Viun11g00815 345 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 177 IPR036291 -
Viun11g00815 345 PIRSF Lac_mal_DH 32 343 IPR001557 GO:0016616|GO:0019752
Viun11g00815 345 FunFam Malate dehydrogenase 32 178 - -
Viun11g00815 345 SUPERFAMILY LDH C-terminal domain-like 178 344 IPR015955 GO:0003824|GO:0016616
Viun11g00815 345 PANTHER MALATE AND LACTATE DEHYDROGENASE 13 345 - -
Viun11g00815 345 FunFam Malate dehydrogenase 179 345 - -
Viun11g00815 345 Pfam lactate/malate dehydrogenase, NAD binding domain 35 177 IPR001236 GO:0016491
Viun11g00815 345 Gene3D - 179 344 IPR015955 GO:0003824|GO:0016616
Viun11g00815 345 MobiDBLite consensus disorder prediction 1 30 - -
Viun11g00815 345 Gene3D - 33 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00815 Viun-Chr11 12158885 12163349 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g00815 11 12158885 12163349 Viun11g00815 11 12158885 12163349 ECH