Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00810 ATGGATCCGACCAAGAAGCGCAAGCTTGATGAAAATGGTTTCGGTGATGCCGACCCGCTTAAACTCTCTCCCACCGAGGCGCGAAAACTCATCGAGCGCTTCACCCCGGAGCAGCTTCTCGACATCCTTCAGGACGCGGTGGCTCGCCACGCCGACGTTCTTGCCTCCGTGCGTGCCGTCGCGGACCCCGATGTGTCGCAGCGCAAACTCTTCGTGCGGGGCCTCGGGTGGGACACCACCACAGATGGCCTCCGCTCACTCTTCTCCACCTACGGCGAGCTTGAGGAGGCTGTCGTGATCATTGACAAGGCAACCGGCAAGTCCAAGGGCTACGGATTCGTCACCTTCCGCCACGTGGACGGTGCCGTCCTCGCCCTCCGCGAACCCAGCAAGCGCATCGACGGGCGCGTTACTGTCACGCAGCTCGCTGCAGCGGGAAACTCCGCGTCGAATGCCAACGCAGCCGATGTTGGGCTCAGGAAGATCTACGTAGCCAACGTGCCGCCGGACCTTCCCGCGGACAAGCTCCTCGCGCATTTTTCTGTGTACGGTGAGATCGAAGAGGGACCCTTAGGGTTTGATAAACAAACTGGAAAATCAAAGGGGTTTGCGCTTTTTGTTTATAAGACTCCTGAAGGGGCTCAAGCTGCGTTATTAGATCCTGTCAAGACTGTGGAAGGAAGGCAATTGAGTTGTAAACTGGCGATAACAGATGGTAAGCAGGGTAAGCGAGCCGGACCAGATTCGGGTCAGGCCCATGGGAATGTTCAGCACGGTCATGGGGATGGAGTGGGGGCTGGAATGGGGATGCCTCCTGCGGCGGGGTCTGGGCCTGGGCAGTATGGCGGCCCGCAATATGGGGGACCGGTCGGGTTGGGTTCGTATGGTGGGTTTGGTGGACAGCCTCCGTTAGGTAACCATAATCATCCTCTGAATTCATCCAACCCCGTACCCGGTTCTATGGCCGGTGCTGGTGGTTACGGCGCCGGGATGGGTGGGCCTTATGGTGGATACGGTGGGCCGGGCTCTGCGGGATTTGGTGCTGCAGGTGGGTTAGGAGGTGCTGGTGGAGGTGCTGGTGTTGGTGGTGGGCTTGGAGGAGCAAGTGGTGGGCTTAGTGGTGGTGCTGGTTCTTTGTATAGATTGCCGGGTTCTGGCGGCATGCCTGCAGGTGGTGGAGGGTATCCCGAGGGTGGTCATTATGGTTTATCAGCTTCGGCTGGATACCAGAACCAGCATCACCCTCCTTCTGGTGCTTCTCCAGTGCCTAGAGTTCCACCTGGTTCGATGTACCCAAATGTGCCTCCTTACTACTAA 1317 0.5862 MDPTKKRKLDENGFGDADPLKLSPTEARKLIERFTPEQLLDILQDAVARHADVLASVRAVADPDVSQRKLFVRGLGWDTTTDGLRSLFSTYGELEEAVVIIDKATGKSKGYGFVTFRHVDGAVLALREPSKRIDGRVTVTQLAAAGNSASNANAADVGLRKIYVANVPPDLPADKLLAHFSVYGEIEEGPLGFDKQTGKSKGFALFVYKTPEGAQAALLDPVKTVEGRQLSCKLAITDGKQGKRAGPDSGQAHGNVQHGHGDGVGAGMGMPPAAGSGPGQYGGPQYGGPVGLGSYGGFGGQPPLGNHNHPLNSSNPVPGSMAGAGGYGAGMGGPYGGYGGPGSAGFGAAGGLGGAGGGAGVGGGLGGASGGLSGGAGSLYRLPGSGGMPAGGGGYPEGGHYGLSASAGYQNQHHPPSGASPVPRVPPGSMYPNVPPYY 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00810 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 160 237 IPR000504 GO:0003723
Viun11g00810 438 MobiDBLite consensus disorder prediction 1 15 - -
Viun11g00810 438 MobiDBLite consensus disorder prediction 1 20 - -
Viun11g00810 438 MobiDBLite consensus disorder prediction 419 438 - -
Viun11g00810 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 145 IPR000504 GO:0003723
Viun11g00810 438 PANTHER GEO13361P1-RELATED 51 324 - -
Viun11g00810 438 FunFam UBP1-associated protein 2C isoform A 51 154 - -
Viun11g00810 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 162 219 IPR000504 GO:0003723
Viun11g00810 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 137 IPR000504 GO:0003723
Viun11g00810 438 SUPERFAMILY RNA-binding domain, RBD 58 143 IPR035979 GO:0003676
Viun11g00810 438 Gene3D - 44 151 IPR012677 -
Viun11g00810 438 MobiDBLite consensus disorder prediction 238 317 - -
Viun11g00810 438 SMART rrm1_1 161 233 IPR000504 GO:0003723
Viun11g00810 438 SMART rrm1_1 69 141 IPR000504 GO:0003723
Viun11g00810 438 Gene3D - 152 263 IPR012677 -
Viun11g00810 438 MobiDBLite consensus disorder prediction 403 438 - -
Viun11g00810 438 SUPERFAMILY RNA-binding domain, RBD 148 267 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00810 Viun-Chr11 11677692 11680405 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00810 156 235 C2H2 Transcription Factor Family AT2G19380 38.750 2.36e-10 60.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g00810 11 11677692 11680405 Viun11g00810 11 11677692 11680405 ECH