Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03088 ATGTTCATGGCTTGTGCAGGAAAAGGAAGTCTAGTTATGGCAGAAAACAAAGACGAAGCCTATTCTGAAACTTCTGAATGTTCATCAGCTTTAACCATACCAATGGCTAGCAGGTGCAGATGCCTGTTTCATAGATTATGCGGTTCTACCGATTCGTGGAACAAGAGCACCACCCCAAAAGGTAGAAGACTTTTCCACAGAGATGTGGAAAAAGAAGAATTCCAGTATGCTAGTAGTCACTGTCTCTCATCGTACTATAGTGTCTTTGTGGTTCGACTAGCAATCATGGTCATGCTAGCCATCTTGATAGGCCTTCTCACTATACTGACATGGCATTTCACGAAGATTTACACAGCAAAATCACTTAGCAGTTTGGCATATGGTTTGCGTTATGAACTTCTGCAACGCCCGGTTTTGAGGATGTGGAATATTTTGAACTCTACTTCTGAAATTACTACAGCTCAGGTCAAACTGTCTCAATATGTGATCAGACGTCACAGCAACCCTGCAACTCAAGCAGAACAAGTTGAGGTTGACTCTAAGACCCTTACGCAGCTGTATGAAGCGATGAGGGCTGTAACATGGGCTTTATTTGCAAGTCGGAAAGCTCTAAACTCTATAACTATCAACTATAGGAATGGATTTGTGCAAGCATTCCACAGAGATCTGAAGGACAACAACACATTTTACATCTATTCTGATCTTTCAAATTATTCTATGGGAGTCAGCAACTCCAACGAGGCCAATTCCGTTTCAACACATCAAGCATGGGATGATAAAACCCCTCGTGGAAACTATTCTGCAATATGGTACCGTGAGCCACTTGACCCCGTGAGTGGTGAAAAGATAGGAAAAGCTATGGAAATTGCTCCTGAAGACTTGATTAACATAGCTGGCCTTTCCCAAGTACCTGATGGTGTAGCTTCATGGCATGTTGCCGTGAGCAAGTTCACAGATTCACCACTGCTTTCAGCAGCATTGCCAGTTTGGGACTCTTCTAATGAGACCATTATGGCAGTTGTGGGGGTCACAACTGCACTTTACAGTGTAGGACAGTTGATGAGAGAGCTTGTTGAGTTGCACAGTGGCCATATGTACTTGACTTCACAAGAGGGTTATTTGCTTGCAACTTCCACAAGTGCACCTCTTCTGGCAAATTCAACAAAGCCTCCTAAGCTTAAGATGGCCGTTGACTGTGAAGACATCGTAATTCGAGAGGGAGCTGAGTGGTTACAGAGAACTTATGGGAACAATTTTCCTCCAAGTCACGAGATTCATGTTGAAAATGTCAAGCTTGGCCACCAAAGATATTACATTGACTCGTTCTTCCTTAAATTGAGGAGACTTCCTTTGGTTGGTGTGATTATCATACCAAGAAAGTATATCATGGGACAGGTTGATGAAAGAGCCTTCAAAACACTGGTTATTCTGATATCTGCATCATTATGTATTTTAGTCATTGGGTGTGTTTGCATTCTGATATTGACAAACGGAGTATCAAAGGAAATGAATCTAAGAGCAGAACTGATAAGTCAACTGGAAGCAAGAAGAAAAGCAGAGGCATCAAGCAATTACAAAAGTCAATTCCTTGCAAACATGAGTCACGAACTGAGGACACCTATGGCAGCAGTAATCGGGTTGCTTGACATTCTCATATCTGATGACTGTCTCACAAATGAACAATACTCAACCGTGACTCAAATAAGAAAATGCTCAACTGCTCTGCTCCGTCTTCTTAACAACATCTTGGATCTGAGTAAGGTGGAATCTGGAAAACTGGTCCTAGAAGATGCAGAATTTGATTTAGGAAGGGAACTTGAAGGGCTTGTAGATATGTTTTCTGTCCAGTGCATTAACCACAATGTGGAGACTGTTTTAGACTTGTCTGATGATATGCCAAAGATCGTTCGGGGTGATTCTGCAAGGGTGGTTCAAATATTTGCAAATCTGATCAACAATTCAATCAAGTTCACTCCATCGGGTCATATTGTTCTGCGGGGATGGAGTGAAAGCCCAAATTCTTCCGTTGGAAGTCCAAATTTTCCTCTTGATCAGAAGAAATTATGGAATTTACAGAAGTGCAGAGAGAAACCAAATGCAAATCATTCAAAAAAAGCATCTATGAAAGACAACAAAGTGATACTTTGGTTTGAAGTTGAGGACACAGGCTGTGGTATTGACCCAAGCAAGTGGGATTCTGTGTTTGAAAGCTTTGAGCAAGCTGATCCATCAACTACTCGACTGCATGGAGGCACTGGTCTTGGTCTTTGCATCGTCAGAAACTTGGTTAACAAGATGGGTGGGGACATCAAAGTAGTAAAAAAGGAGGGCGCAGGAACACTGATGCGATTATGCTTACTTCTCAGTGCGCCCATGGATGTCACTGAACAACATTGTGCAGTAGATTTGACAGACAATGGCTTAGTGGTACTGCTTGGCTTACATGGCAACATGGGTAGATTAATTACATCCAAGTGGCTTCAGAAAAACGGGGTGTGCACAATGGAAGCATCTGACTGGAATGGACTAACTCAAATTTTGAGGGAACTATTTCATGTACGAAGTTCGGTCCATAATACTGACTTTGATGCACACTATCCAGCAAAAGAGGAATTGAAGTCTAAACTACTGAGCATACGAGATATGAGGAACCCAGTTTTTGTCATTGTTGTTGACATTGGATTACTTGACTTGAGCACAGATATATGGAAGGATCAACTTAACTTCCTTCAAAGGTACTTTGGTAGAGCAAAGTTCCTATGGATGCTGAATCATGACACTTCCAATAACATAAAGATGGAGCTCCGTAGGAAAGGGCATTTACTGATGGTCAACAAACCGCTTTACAAGGGAAAAATGATCCATATTTTGGAATCTGTTATAAAAGAGAGAAATTTTGAGCTACAAAAGAAAAGCATGATTGTTCCAAGGACCACAATGAAAGAGGGAGATTTACACGAATTTCTTGAGATTGATTCCACTCATTTTGATGCTGCTAGTTCTGATGATTCTGACATATCTGATATAGCTGGTTCAAATCCTGCTAGTGCTGATGGAGATAAACCAGTTGAGAAGCTAGAAAAATCTCATCCATCATCACCATACCATATGAATAACTGCCTAGTTAGATTAACCAATGAAAATGAATATTTGGAGGAAAATGATTTGGGGAAAGAAGAATCTTCTAGTCCCGGCCCAGATTATGCCACTGAAGAAAACCAACCTAAATCACTGTCCACCAAAGAATCACCATCCATTTCAACAGGAGATCAGGATGGAGATTCTGAATGTGGTGAAACACACAGGGTGACCAGCACAAGTAAATCAGTAGATGGAAAGAAATCTCTTGAGGGCCTAAAGATTTTGCTTGCAGAAGATACACCAGTGCTTCAAAGGGTTGCAACTATAATGCTTGAGAAAATGGGAGCTGCTGTAGTTGCTGTAGGTGATGGACAACAGGCAGTAGAAGCTCTCAATTGCATGTTCACTGCTGAAGATTGCAGAAGGGAATCACTCCAGAAGGATAGAAACAAAAGATCTCAAACAGAGATTTTGTCTAGCCGTCCCTATGACTTGATCCTGATGGATTGTCAGATGCCAAAGATGGATGGCTATGAGGCAACAAAAGAAATCAGGAAATCAGAAGTGGGAACAAGCTTTCACATTCCCATTGTTGCTCTTACAGCACATGCAATGTCCTGTGATGAAGCCAAATGCCTGGAGGTGGGCATGGATGCTTACTTAACAAAGCCAATTGATTTCAAAATGATGGTGTCCACCATTCTTTCACTCACTAAAACAACATCTTGA 3810 0.415 MFMACAGKGSLVMAENKDEAYSETSECSSALTIPMASRCRCLFHRLCGSTDSWNKSTTPKGRRLFHRDVEKEEFQYASSHCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHFTKIYTAKSLSSLAYGLRYELLQRPVLRMWNILNSTSEITTAQVKLSQYVIRRHSNPATQAEQVEVDSKTLTQLYEAMRAVTWALFASRKALNSITINYRNGFVQAFHRDLKDNNTFYIYSDLSNYSMGVSNSNEANSVSTHQAWDDKTPRGNYSAIWYREPLDPVSGEKIGKAMEIAPEDLINIAGLSQVPDGVASWHVAVSKFTDSPLLSAALPVWDSSNETIMAVVGVTTALYSVGQLMRELVELHSGHMYLTSQEGYLLATSTSAPLLANSTKPPKLKMAVDCEDIVIREGAEWLQRTYGNNFPPSHEIHVENVKLGHQRYYIDSFFLKLRRLPLVGVIIIPRKYIMGQVDERAFKTLVILISASLCILVIGCVCILILTNGVSKEMNLRAELISQLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYSTVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKIVRGDSARVVQIFANLINNSIKFTPSGHIVLRGWSESPNSSVGSPNFPLDQKKLWNLQKCREKPNANHSKKASMKDNKVILWFEVEDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRNLVNKMGGDIKVVKKEGAGTLMRLCLLLSAPMDVTEQHCAVDLTDNGLVVLLGLHGNMGRLITSKWLQKNGVCTMEASDWNGLTQILRELFHVRSSVHNTDFDAHYPAKEELKSKLLSIRDMRNPVFVIVVDIGLLDLSTDIWKDQLNFLQRYFGRAKFLWMLNHDTSNNIKMELRRKGHLLMVNKPLYKGKMIHILESVIKERNFELQKKSMIVPRTTMKEGDLHEFLEIDSTHFDAASSDDSDISDIAGSNPASADGDKPVEKLEKSHPSSPYHMNNCLVRLTNENEYLEENDLGKEESSSPGPDYATEENQPKSLSTKESPSISTGDQDGDSECGETHRVTSTSKSVDGKKSLEGLKILLAEDTPVLQRVATIMLEKMGAAVVAVGDGQQAVEALNCMFTAEDCRRESLQKDRNKRSQTEILSSRPYDLILMDCQMPKMDGYEATKEIRKSEVGTSFHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKMMVSTILSLTKTTS 1269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03088 1269 Pfam Response regulator receiver domain 1121 1260 IPR001789 GO:0000160
Vimu7g03088 1269 PANTHER TWO-COMPONENT HISTIDINE KINASE 74 795 - -
Vimu7g03088 1269 CDD HisKA 526 587 IPR003661 GO:0000155|GO:0007165
Vimu7g03088 1269 Gene3D - 513 592 - -
Vimu7g03088 1269 ProSiteProfiles Histidine kinase domain profile. 532 790 IPR005467 -
Vimu7g03088 1269 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 638 788 IPR003594 -
Vimu7g03088 1269 FunFam Histidine kinase 1-like protein 513 592 - -
Vimu7g03088 1269 SUPERFAMILY CheY-like 1117 1265 IPR011006 -
Vimu7g03088 1269 SMART REC_2 1119 1261 IPR001789 GO:0000160
Vimu7g03088 1269 Gene3D - 1098 1267 - -
Vimu7g03088 1269 PRINTS Bacterial sensor protein C-terminal signature 750 768 IPR004358 GO:0016310|GO:0016772
Vimu7g03088 1269 PRINTS Bacterial sensor protein C-terminal signature 715 729 IPR004358 GO:0016310|GO:0016772
Vimu7g03088 1269 PRINTS Bacterial sensor protein C-terminal signature 733 743 IPR004358 GO:0016310|GO:0016772
Vimu7g03088 1269 ProSiteProfiles Response regulatory domain profile. 1120 1265 IPR001789 GO:0000160
Vimu7g03088 1269 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 513 592 IPR036097 GO:0000155|GO:0007165
Vimu7g03088 1269 MobiDBLite consensus disorder prediction 999 1039 - -
Vimu7g03088 1269 MobiDBLite consensus disorder prediction 1066 1093 - -
Vimu7g03088 1269 SMART HKATPase_4 638 790 IPR003594 -
Vimu7g03088 1269 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 580 786 IPR036890 -
Vimu7g03088 1269 Gene3D - 593 791 IPR036890 -
Vimu7g03088 1269 Pfam His Kinase A (phospho-acceptor) domain 526 591 IPR003661 GO:0000155|GO:0007165
Vimu7g03088 1269 CDD REC_hyHK_CKI1_RcsC-like 1121 1261 - -
Vimu7g03088 1269 MobiDBLite consensus disorder prediction 1055 1111 - -
Vimu7g03088 1269 SMART HisKA_10 525 591 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03088 Vimu-Chr7 26196238 26202883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03088 34 1269 Histidine Kinase Gene Family AT2G17820 62.750 0.0 1555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu7g03088 HATPase_c 2.7e-23 CL0025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03088 7 26196238 26202883 Vimu7g03088 7 26196238 26202883 ECH
Vimu7g03088 7 26196238 26202883 Vimu7g03088 7 26196238 26202883 PCT