Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00305 TTGCAGAGCCGAGTTATCTGTCTCGTTTTGATTGAGGAATCAAAACCGAGATTCAGAAAAAAAGAGAAAAGAAAACAAAGCACCCCCGATTCTCGGTTGTTTTTTCGGAACTATCCCTGTTTGTGTCTCGAACACAGTTTTGGTTTTGCTCTTTGTCTTCTCTCTCTTTCTATTTGGGTCTTTGCCTTTTCTTTGTCTTTTGTTTTCCTGTTTGGCGTTCCTTCGGCCATGATTGGAGGCAAAGATCTTGTTCCCAATGGCGTGGACACCGAGGGAGAGAACTCAAGGAGCAAGGTGCAGCAGCATCAGCATCAGCATCGTGATTTTTCTCAGGGCAAGGAGCGCCCACAAGAGAAAAAGCAAAGTTACCCGGAGAAGAAGAAGGTTGGTGTTGTTGAGTTTCAGTCACCACCCTCAAAATTTGTCTCTTCCGGGTCGCAAGAGTTGACCCTCAGCTACCTCTGTGACAACCGAAAATTGAGTCTTGTCGAGAGAGAGGTTGACGGCAGAAGCTCGGTGAAGGGCAAAGAAGTTGTGGTTTATGGGAATTCAGATCAAGATCAAGACGAGTTAAGGTTTAAATCGTCTCTGGAAGAGGTGACAGCATTTAGTGCGCGACAATACTTCGACCAGGATTGTCTCCGGAGGAAGGTGGCTGTGGGGAACCAAAAGCAAGATCCGGATGAGAAATGGGTGGAGAGGGATTTCTTGAGTTTGAGTGAGTCAAGGGAGAATTCTTCGAAGAGATCCATTGATGAAGAGTGTGAAACGGAGAGGAGTGGTGGCAGCAAGAAGCAGAAGCTTGAGACTCTCAGTCTCTCTCTTGCTTTGCCTGATGTGTCGCTCTCTCTCACAGCTTCAAACGCTTTGCAAAATGGTGACCAACTTGTTAAGCCAAAGCCTGTTATGCCATCCACAAGGCCCACAACTACCATCAATTCATGTTCAAATGATTACACTGCAGCTTCTATGTCTCAATCTTACTCTCACCCTTTCTCACACAACCCAAGTTGCTCAATCACCCGAAATTCAACCGACAATTTTGAGTATTCCCACAGCAAAGATGATCAAATTTGGCATTGTGGGGAGGGCACTAATGGGTCAGTTCATAGCAGGTTCAAGCCAATAGGAGACGGGGTTGCTTTGGCCAATTATTCCTTTATGCAAGGGAACAGTCACTATAAGGCTACTAGCTCGGATAACCAATCTTTTTTCCCTTCAGAATTGCCTGCAAGAGTGAGATTTGAAGCTCAGTCTGAGGGCTCCAGGGGAAAGAATTCTGAGAATCTGAGAGGCTTGGAAGGTGTGGATGGTGGGAAAATGATGAAGTTTTCTAGATCAGAGAGAATTCTAAGAGAAATTGTGTCTGAGTCTATCCCAACCATGGCTTTGCAATTTCAGGAGTTCACTGATGAAGTCATAACTTCAATTAAGGAACACTTGAAAGGTCTCATTGATACACCAGAGAAGAAAGGGGAATTGATGAACCTCCAGAATCGGCTTGGCCGAAGATCTGACCTCACCAGAGAGACTCTTTCCAAGTGTCATAAAGTGCAGCTAGAGATTTTGACTGCTATCAAGATGGGGCTTGCGAGTTTCTTGTCTGGTAAGTTCCAAATCTTGGAGATGGTGGAGGTTTTCTTGTATATGAGATGTAGAAATGTGAACTGCAAGAGCTTGCTGCCCGTTGAAGACTGTGACTGCAAGATGTGCTCAGGAAATAAGGGGTTTTGCAGTTCTTGCATGTGTCCTGTTTGTATGAGCTTTGATTGTGCAAGTAATACTTGTAGTTGGGTTGGCTGTGATGTTTGTTCACACTGGTGTCATGCTACCTGTGCTATTCAGAAGAATCTAATCAAACCTGGGCCTATCTTGAAGGGTCCTTCTGGGACCTCTGAGATGCAGTTTCATTGTATTGGCTGTGGACATACTTCAGAAATGTATGGCTTTGTCAAAGAGGTCTTTGTGTATTGTGCCAAGGATTGGGGCCTAGAAACATTGATGAAGGAGCTTGACTGTGTGAGGAGGATTTTCCAGGGAAGCGAAGATCGCAAAGGGAAGGAATTGCATTTTAAGATGGATGATATGCTGTCAAAACTTCAAGCTAAAGTGGTTTCTCCTTCGGATGCCTGCAACTTTATCATACAGTTTTTCAGCTGCTTAGGCCATGTCCAGTACTATAAAAGATTAGTGATCAATCTGCAGCATTTGATGTGTAACCAACTGATTAAAGATTTTGGAATGGCATCTGAGAGTGGAAGATTTAGGAATGACTTTGTTGCAGAAATAGGAACAAGAAATGTTCTTTCATCACCTAGGCACTGCACTGGCCACTTAATCAAGCAAAAAATGCTTCAGTTGGTTGGAATGTTGTATGCATACACTGATGGCATGTCAGATTTTCCAGCTTCCGGTACATCCACAAAGGATTTGCCGAAATCTAAGGCTAACCTTACAGTAGACACAACATCATCTCTTTCCCAATCTACTTCTCTAATTCCAAAATACCCTTATGACATGAGCTTCACAAGATCAAATGATCTTCAACGGAAAGAGCTCAAAACTTCCCTTTTGAGTGAGCAGAAAAAGGAGTCTGATCTGCACCTTGAGGCTTTACTAAGGAAAGGAGGAGGGCTTGAAAGCTTGGAGAGCATCATAAGGATAAAAGAGGCCGAAGCCGGAATGTTCCAGAGCAAGGCAGATGAGGCAAGGAGAGAGGCTGAGGGATTCCAGAAGATGATCAAGACAAAGGCTGCACAGATGGAAGAGGAGTATGCAGAAAGGCTTGGCAAACTTTGCTTGCATGAGGCAGAGGAAAGGAGGAAGAAGAAATTTGAGGAACTCAATGTGTTGCAAAATTCACACTATGATTACTTCAACATGAAAAGCAGAATGCAAGATGAGATTCATGGTTTGTTGAAGAGAATGGAAGCAACAAAGCAGCAATGGGTCTAA 2955 0.4393 MQSRVICLVLIEESKPRFRKKEKRKQSTPDSRLFFRNYPCLCLEHSFGFALCLLSLSIWVFAFSLSFVFLFGVPSAMIGGKDLVPNGVDTEGENSRSKVQQHQHQHRDFSQGKERPQEKKQSYPEKKKVGVVEFQSPPSKFVSSGSQELTLSYLCDNRKLSLVEREVDGRSSVKGKEVVVYGNSDQDQDELRFKSSLEEVTAFSARQYFDQDCLRRKVAVGNQKQDPDEKWVERDFLSLSESRENSSKRSIDEECETERSGGSKKQKLETLSLSLALPDVSLSLTASNALQNGDQLVKPKPVMPSTRPTTTINSCSNDYTAASMSQSYSHPFSHNPSCSITRNSTDNFEYSHSKDDQIWHCGEGTNGSVHSRFKPIGDGVALANYSFMQGNSHYKATSSDNQSFFPSELPARVRFEAQSEGSRGKNSENLRGLEGVDGGKMMKFSRSERILREIVSESIPTMALQFQEFTDEVITSIKEHLKGLIDTPEKKGELMNLQNRLGRRSDLTRETLSKCHKVQLEILTAIKMGLASFLSGKFQILEMVEVFLYMRCRNVNCKSLLPVEDCDCKMCSGNKGFCSSCMCPVCMSFDCASNTCSWVGCDVCSHWCHATCAIQKNLIKPGPILKGPSGTSEMQFHCIGCGHTSEMYGFVKEVFVYCAKDWGLETLMKELDCVRRIFQGSEDRKGKELHFKMDDMLSKLQAKVVSPSDACNFIIQFFSCLGHVQYYKRLVINLQHLMCNQLIKDFGMASESGRFRNDFVAEIGTRNVLSSPRHCTGHLIKQKMLQLVGMLYAYTDGMSDFPASGTSTKDLPKSKANLTVDTTSSLSQSTSLIPKYPYDMSFTRSNDLQRKELKTSLLSEQKKESDLHLEALLRKGGGLESLESIIRIKEAEAGMFQSKADEARREAEGFQKMIKTKAAQMEEEYAERLGKLCLHEAEERRKKKFEELNVLQNSHYDYFNMKSRMQDEIHGLLKRMEATKQQWV 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00305 984 MobiDBLite consensus disorder prediction 95 127 - -
Vimu7g00305 984 Pfam PHD - plant homeodomain finger protein 552 676 IPR032881 -
Vimu7g00305 984 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 504 519 IPR004082 -
Vimu7g00305 984 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 465 487 IPR004082 -
Vimu7g00305 984 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 589 609 IPR004082 -
Vimu7g00305 984 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 662 681 IPR004082 -
Vimu7g00305 984 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 543 564 IPR004082 -
Vimu7g00305 984 MobiDBLite consensus disorder prediction 88 127 - -
Vimu7g00305 984 Coils Coil 934 954 - -
Vimu7g00305 984 CDD PHD_OBE1_like 582 641 IPR047578 -
Vimu7g00305 984 Coils Coil 962 982 - -
Vimu7g00305 984 Pfam Coiled-coil region of Oberon 846 973 IPR032535 -
Vimu7g00305 984 MobiDBLite consensus disorder prediction 242 265 - -
Vimu7g00305 984 MobiDBLite consensus disorder prediction 242 266 - -
Vimu7g00305 984 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 95 983 IPR004082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00305 Vimu-Chr7 3699794 3703557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00305 552 704 PHD Gene Family AT5G57380 23.529 3.68e-08 55.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00305 7 3699794 3703557 Vimu7g00305 7 3699794 3703557 ECH