Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00299 ATGGTTCATTGTACAGCCACCCTTTCTTTCCTGTTACAGGTAAACAAAACTGTCCCTGCTTGGAATATTATATGCAAGAGGGAGTGTGAACCAGTTTCACGCCTACAGAGCATGATTATTGCACCAGTGAGAGACAAGGCCAAGTGTTTTGGGTGTAGGGGAGGAGAGAGATGGGGTGAGGGAGGTGGTGGTTCTTTGGAATTTGAGCTGTTTTTCCATCTTTTGAGACCCGTGCTTGTTTCTGAGCTTGGAAAAGAAAGAGAGGCAATTGGTCAATCCTTCATCATGCTTGGTGTGTTTGTGCTTGCCCTTTCTGATGTTTTGGATCACGAAAAACAATGCTGTAATGATGCTTTTACATGGAGTTTGAGCCACCATCCTGTGGCTTTGAGGTTGTATGATCAAATGGGGTCTAAAAGAAAGTACACTTTCATTCAGGCTCACAGAGCTTGGCTTCCAAAGTTCTTGCTGCTGTGGATCCTGCTAATGGCTTTGATAAGTTGGTGCATCTTTAGCAAAATGGATGATGATACTAAAGTCAGAAGGAAGGAGGTGCTGGGTAGCCTCTGTGATCAAAGGGCAAGAATGCTACAGGATCAGTTTAGTGTTAGTGTTAACCATGTCCATGCCCTTGCCATCCTCGTTTCAACCTTCCATTACTACAGATACCCTTCTGCCATTGACCAGGAAACCTTTGCCGAGTATACAGCCCGGACAGCATTTGAACGGCCATTACTGAGTGGTGTGGCATATGCACAAAGAGTTGTTAAATCTGAGAGAGAGAGATTTGAGAAAGAACATGGATGGGTTATAAAGACAATGGAAGAGAAGTCTTCACTGGTTAGAGATGAGTATGCCCCGGTGATATTTGCACAAGAAACTCTCTCATATCTTGAGTCTCTTGATATGATGTCTGGACAGGAGGACCGAGAAAACATTTTAAGGGCTAGAGCCACTGGGAAAGCAGTTCTGACGAGCCCTTTCAGGCTGTTGGGTTCTCACCATCTTGGTGTGGTTTTAACATTTCCTGTGTACAAGTCCAAGCTCCCTCAGAAGCCAACAGTGGAAGAACGCATCGAAGCAACTGCAGGATATGTTGGAGGATCCTTTGATGTTGAGTCCCTTGTTGAGAATTTACTTGGACAACTTGCTGGTAACCAAGCAATTTTGGTGAATGTATATGATATCACAAACTATACTAATCCACTAATAATGTATGGAAAGCCCTATGAAGAAGGTGATATGTCTCTTGCCCATGAAAGCAAGCTTGATTTTGGAGACCCATTCAGGAAACATCAAATGATATGTAGGAGCTTTGATATTTTCACTTGTCAAGAGATAGTTATCATCAAAACTTTGAATAGGTACCATCAGAAGGCACCAACAAATTGGATTGCTGTTACCACGGCATTTCTATTCTTTGTGATTCTTATATTAGTGGGGTACATTTTATACGGTGCTGGAAATCATATTGTCAAAGTGGAAGATGATTTCCATGAAATGCAGGAACTGAAAGTTCGAGCAGAATCAGCCCACGTTGCCAAGTCCCAGTTTCTAGCCACGGTCTCTCATGAAATTAGAACACCCATGAATGGTATCTTAGGTAACTTCAAGAATACAGAATTGAGTTCAACCCAACGGGATTATGCTCAGACTGCTCAGGCATGCGGAAAGGCACTAATAACATTAATAAATGAGGTGCTGGACAGAGCTAAAATTGAAGCTGGCAAGTTAGAGCTGGAGGCTGTTCCCTTTGATCTTCGTTCCATACTTGATGATGTTCTTTCCCTTTTCTCTGAGAAATCTAGACACAAAGGTTTAGAGCTGGCTGTGTTTGTTTCCGATAAAGTACCGGATATTGTCATGGGAGATCCTGGGAGATTCAGACAAATAATAACAAATCTTGTTGGCAACTCTGTTAAATTCACTGAACACGGACATATATTTGTCAAAGTCCATCTAGGGGACAATAGAAACTGCATAATGAATGGAAAACATGAGACTTTTCTGAATGGAGAATCAGATGAAGTTTTCCTTATATCTGATGACTATCATTTCAAAACCTTAAGTGGACGTGAAGCAGCTGACGAACGGAACAGCTGGGATAATTTTAAGCTCCTAATTGCTGATGAAAAATGTTGCCTTGATTCTTCAAGAGAAATGGTGGCTACTTGTGAAACATCTGAACAAGTCACATTGAGGGTGTGTGTGGAAGACACAGGAATTGGAATCCCTTTTTCAGCACAGGATAGGATATTCATGCCTTTTGTGCAGGCTGACAGCTCAACTTCACGAAATTATGGGGGCACTGGTATTGGCTTGAGTATCAGCAAATGTCTGGTTGAACTAATGGGTGGTAAGATAAACTTCATAAGCCGACCCCAGATTGGGAGCACTTTCTCGTTTACTGCAGTTTGTGGAAGATTTAAGAAAGGTCCGGTTACTGACATGAAGAAAAATTTGGAAGATCTTCCTTCAAGTTTTAGAGGGCTGAAAGTCATTGTTGTTGATGGAAAACCTGTTAGAGCTGCTGTGACTAGATACCATTTGAAGAGACTAGGTATACTAGTTAAGGTTGAAAGTAGCATCAGTAAGGCTGTTGCTTTATATGGTAAAAGTGGTTTTCTGGACTCAGGAATGTTCCTGCCAGATATTATCATGGTTGAGAAGGACACATGGATATCTGGAGAAGATGGGATTTTCAATATGTGGAAACAGAATGGTCACATGTTTAAGATACCTAAAATGATCCTTCTGGCAACCAATATTAGTAACATTGAATTTGATAAAGCGAAGGCCATGGGTTTCACTGATACTGTGATCATGAAGCCTCTGAGAGCTAGTATGGTGGCTGCTTGTCTTCAGCAAGTTTTGGGGATGGGGAAGAAGAGGCAGCTAGGGAAAGACATGCCGAATGGTTCTGCTTTTCTACACAGCCTTCTCTATGGAAAGAAAATCTTGGTGGTTGATGACAATGGGGTAAACCGAAGGGTTGCTGCAGGTGCTCTGAAAAAGTTTGGAGCTGATGTGAAGTGTGCAGAAAGTGGCAAAGCAGCACTTGAAATGCTGCAATTGCCTCACAATTTTGATGCTTGCTTCATGGACATTCAAATGCCAGAAATGGATGGATTTCAAGCAACTAGCCAAATTCGGATGATGGAGAGCAAGGCAAATGAGGAGATGAAGAATGGGAGTGAGTGGCATGTGCCTATATTGGCAATGACAGCTGATGTGATCCATGCTACATATGATGAGTGCTTGAAACGTGGCATGGATGGATATGTCTCAAAGCCATTTGAGGAAGAGAATCTGTATCAGGAAGTTGCAAAGTTTTTCAAAACAAAGACCATCTCAGACTCATAA 3363 0.4205 MVHCTATLSFLLQVNKTVPAWNIICKRECEPVSRLQSMIIAPVRDKAKCFGCRGGERWGEGGGGSLEFELFFHLLRPVLVSELGKEREAIGQSFIMLGVFVLALSDVLDHEKQCCNDAFTWSLSHHPVALRLYDQMGSKRKYTFIQAHRAWLPKFLLLWILLMALISWCIFSKMDDDTKVRRKEVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRYPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVKSERERFEKEHGWVIKTMEEKSSLVRDEYAPVIFAQETLSYLESLDMMSGQEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPQKPTVEERIEATAGYVGGSFDVESLVENLLGQLAGNQAILVNVYDITNYTNPLIMYGKPYEEGDMSLAHESKLDFGDPFRKHQMICRSFDIFTCQEIVIIKTLNRYHQKAPTNWIAVTTAFLFFVILILVGYILYGAGNHIVKVEDDFHEMQELKVRAESAHVAKSQFLATVSHEIRTPMNGILGNFKNTELSSTQRDYAQTAQACGKALITLINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIITNLVGNSVKFTEHGHIFVKVHLGDNRNCIMNGKHETFLNGESDEVFLISDDYHFKTLSGREAADERNSWDNFKLLIADEKCCLDSSREMVATCETSEQVTLRVCVEDTGIGIPFSAQDRIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGKINFISRPQIGSTFSFTAVCGRFKKGPVTDMKKNLEDLPSSFRGLKVIVVDGKPVRAAVTRYHLKRLGILVKVESSISKAVALYGKSGFLDSGMFLPDIIMVEKDTWISGEDGIFNMWKQNGHMFKIPKMILLATNISNIEFDKAKAMGFTDTVIMKPLRASMVAACLQQVLGMGKKRQLGKDMPNGSAFLHSLLYGKKILVVDDNGVNRRVAAGALKKFGADVKCAESGKAALEMLQLPHNFDACFMDIQMPEMDGFQATSQIRMMESKANEEMKNGSEWHVPILAMTADVIHATYDECLKRGMDGYVSKPFEEENLYQEVAKFFKTKTISDS 1120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00299 1120 ProSiteProfiles Histidine kinase domain profile. 521 803 IPR005467 -
Vimu7g00299 1120 SMART HisKA_10 514 576 IPR003661 GO:0000155|GO:0007165
Vimu7g00299 1120 SMART CHASE_2 223 408 IPR006189 -
Vimu7g00299 1120 CDD REC_hyHK_CKI1_RcsC-like 986 1108 - -
Vimu7g00299 1120 Gene3D CHASE domain 227 440 IPR042240 -
Vimu7g00299 1120 CDD HisKA 514 572 IPR003661 GO:0000155|GO:0007165
Vimu7g00299 1120 CDD HATPase_EvgS-ArcB-TorS-like 628 804 - -
Vimu7g00299 1120 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 565 803 IPR036890 -
Vimu7g00299 1120 FunFam Histidine kinase 4 227 440 - -
Vimu7g00299 1120 SUPERFAMILY CheY-like 827 959 IPR011006 -
Vimu7g00299 1120 Pfam Response regulator receiver domain 986 1108 IPR001789 GO:0000160
Vimu7g00299 1120 Gene3D - 488 574 - -
Vimu7g00299 1120 Gene3D - 979 1119 - -
Vimu7g00299 1120 PANTHER TWO-COMPONENT HISTIDINE KINASE 143 1109 - -
Vimu7g00299 1120 FunFam Histidine kinase 4 486 574 - -
Vimu7g00299 1120 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 500 577 IPR036097 GO:0000155|GO:0007165
Vimu7g00299 1120 ProSiteProfiles Response regulatory domain profile. 985 1112 IPR001789 GO:0000160
Vimu7g00299 1120 Pfam His Kinase A (phospho-acceptor) domain 514 576 IPR003661 GO:0000155|GO:0007165
Vimu7g00299 1120 PRINTS Bacterial sensor protein C-terminal signature 792 805 IPR004358 GO:0016310|GO:0016772
Vimu7g00299 1120 PRINTS Bacterial sensor protein C-terminal signature 768 786 IPR004358 GO:0016310|GO:0016772
Vimu7g00299 1120 PRINTS Bacterial sensor protein C-terminal signature 733 747 IPR004358 GO:0016310|GO:0016772
Vimu7g00299 1120 PRINTS Bacterial sensor protein C-terminal signature 751 761 IPR004358 GO:0016310|GO:0016772
Vimu7g00299 1120 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 623 804 IPR003594 -
Vimu7g00299 1120 ProSiteProfiles CHASE domain profile. 223 435 IPR006189 -
Vimu7g00299 1120 SMART HKATPase_4 623 808 IPR003594 -
Vimu7g00299 1120 ProSiteProfiles Response regulatory domain profile. 832 958 IPR001789 GO:0000160
Vimu7g00299 1120 Gene3D - 575 807 IPR036890 -
Vimu7g00299 1120 SMART REC_2 984 1108 IPR001789 GO:0000160
Vimu7g00299 1120 Gene3D - 174 226 - -
Vimu7g00299 1120 SUPERFAMILY CheY-like 983 1112 IPR011006 -
Vimu7g00299 1120 Pfam CHASE domain 226 406 IPR006189 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00299 Vimu-Chr7 3599696 3605705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00299 126 1120 Histidine Kinase Gene Family AT2G01830 68.468 0.0 1350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu7g00299 HATPase_c 6.4e-31 CL0025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00299 7 3599696 3605705 Vimu7g00299 7 3599696 3605705 ECH