Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00058 ATGGAGAGGGATTTTATGGGTCTGAACTCGAAGGAGCCATTCGTTGGAATGAAGGAAGAGATGAATAATGATAGTGGGTGCAAAATCTCAGGCATGTTTATGTTTCACAAAAGGAGGTATGGTAAAATGGCCTTTCATGAACAACGTATCTATCCATCCTCATTCGATGCCTTTGAATACTCCTCAGATTTGAACCTAGCTTTAAGAAGTTTTGCACTACCTCATAAATCTGTCAATCATGATGAACAAGGTGGTGGCATTCATTTTTCCCTGACTCCTTATCCTACACTACATGATGTGAATTATATGAACCGCCCTCATAATGTGAAGATGTTTCCAGTTCCCAAACAAGCAATTCCAGTTTCCATGGGACCTCTAACCCTAAATAATCCCTTTGCAACTCTTGGTCAGAATATGAATGCTTCTAGTATGAAGCAACCACTACTAGGGGGAATACCTGTTACAGCACCCCATTCAGTTCTTCCTGTAGTTGGAGTTGGTGCTGTTGCTGGAATGACCGAATCATGTGTGAAACCATCTGTATCTGTTCCTAAACTTACCATCTTCTATGCTGGCACTGTGAATGTCTTTGATGATATCACTCCTGAGAAGGCTCAAGCAATCATGTTGATGGCTAAGAATGGCTTATCAGTTGCTTCTAAGGTGTCAGTGCCTAATGTTTCAAGTAAACCCAGACATAGTAAACTCATACCACTTTCAAGTAATTTATCTGGGTCTTCACATACTGGTACAAAATCAGGGAGTGTTTCAAGTAGCGGTGATGAATTTCTGGCAGCTAAAACATCTGGTGGTACCCCTACTTCTGTTAACAAAGCAGAGACTCCTAAAGTAGTCAACACAAACACCATGCTGTCATCAGCTGTGCCACAAGCTCGCAAGGCATCATTGGCTCGATTTTTGGAGAAGCGCAAAGAAAGGGTGTTGAGTGCAGCACCATATAACCTGGACAAGAAGTATGAGAATATGTCAGAAAAGAGTGCAACTGTTTCTAACATCAGTGCAAGTGAGGGGGTAACCAAACAAGGATAG 1050 0.4181 MERDFMGLNSKEPFVGMKEEMNNDSGCKISGMFMFHKRRYGKMAFHEQRIYPSSFDAFEYSSDLNLALRSFALPHKSVNHDEQGGGIHFSLTPYPTLHDVNYMNRPHNVKMFPVPKQAIPVSMGPLTLNNPFATLGQNMNASSMKQPLLGGIPVTAPHSVLPVVGVGAVAGMTESCVKPSVSVPKLTIFYAGTVNVFDDITPEKAQAIMLMAKNGLSVASKVSVPNVSSKPRHSKLIPLSSNLSGSSHTGTKSGSVSSSGDEFLAAKTSGGTPTSVNKAETPKVVNTNTMLSSAVPQARKASLARFLEKRKERVLSAAPYNLDKKYENMSEKSATVSNISASEGVTKQG 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00058 349 SMART tify_2 179 214 IPR010399 -
Vimu7g00058 349 MobiDBLite consensus disorder prediction 226 281 - -
Vimu7g00058 349 MobiDBLite consensus disorder prediction 330 349 - -
Vimu7g00058 349 ProSiteProfiles Tify domain profile. 179 214 IPR010399 -
Vimu7g00058 349 Pfam Jas motif 296 320 IPR018467 -
Vimu7g00058 349 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 142 330 IPR040390 -
Vimu7g00058 349 MobiDBLite consensus disorder prediction 331 349 - -
Vimu7g00058 349 Pfam tify domain 185 212 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00058 Vimu-Chr7 742457 745797 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00058 109 333 Tify Gene Family AT3G17860 39.271 3.06e-29 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vimu7g00058 tify 7.1e-16 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00058 7 742457 745797 Vimu7g00058 7 742457 745797 ECH