Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00043 ATGGACAGTGAAAAGAGCTTAACAGAAGAGGACAAGGAAGAGGATGATAATGGTGGAGGAATCTGCTTACTATATAAACAAAAAAACACTCACAGTCACATGCATTTTCTGTGCAACACGACCCCACCATTCCACCACCAAACAAATAAATACCAAATAATACTAAAAATCCGTGTCTTTGCCAACTTCTCGCCTCTTCAAAACTTAGATACTCCCTCTTCTCTTCGCTTCTTCATTCAAGAGGAGGAGTATGCTATGGACTCCAAGGCGATGACTTTCATAACCCACCAAGCCATTTTCAACGCTGTTCGATGTGGGGACCTTCAAGGGCTGAAGGAACAGCTGAAGAATTGCAAGGGTGAGGGCACGTCAGAAGGGGTGATTTCGGAGTTGATAACTATGCCGAACGATGAAGGGGAAACTTTGTTGTATATAGCTGCTGAGATTGGTCATCGTGAGGTGTTCAGCTTCTTGCTTGGTTTGTGTGACTTGGAGGTGCTGAAGATCAGGGCCAACTCTGACATGAACGCCTTTCACGTGGCTGCCAAACGTGGCCATCTGGGTAGGTTTTTCCTTCAGGACATTTTGAGTACCTGGCCTGAGGTTTGTAAGATATGCAACTCCTCTAACACTAGTGCCCTATATTTGGCTGCTGTTCAAGATCATTTGGATGTAGTGAATGCAATATTGGATGTTGATGTGAGTTCAATGATGATAGTAAGGAAAAATGGCAAAACTGCATTACATAATGCTGCTAGGTATGGCATCCTTCGCATTGTAAACGCACTGATTGCCCGAGATTCTGGAATAGTCTGCATCAAAGATAAAAAGGGTCAAACTGCACTGCATATGGCTGTGAAAGGACAAAGTACTTCAGTGGTGGAAGAGATATTACAAGCAGACCTTACGATATTAAATGAACGAGATAAGAAGGGAAACACTGCTCTTCACATGGCTACCAGGAAAGTGCGTTCACAGATTGTTAGCTTTTTGTTAACCTACACAGCTATAGATGTCAATGCGATCAATAATCAGAAGGAAACAGCCTTGGATTTGGCAGATAAACTGCCATATGGAGATTCAGCTTTGGAAATCAAGGAGGCCCTTACAGAATGTGGTGCCAAGCATGCCAGGCATATTGGGAAAGTGAATGAAGCCATGGAACTAAAAAGAGCTGTGAGTGATATCAAACATGAGGTGCAATCACAGCTTATACAGAATGAAAAGACTCGTAGAAGAGTTTCCAGTATTGCCAAGGAATTGAAGAAAATCCACAGAGAAGCAGTTCAGAACACCATTAATTCTGTCACAGTAGTATCTGTTCTCTTTGGCTCAATAGCATTCATGGCCTTATTCAGCTTACCCGGTCAATACCGAAAGAAGCAACCGGAGGCAGGAGAGGCAAACATAGCCCATGATGTTGCCTTCAGTGCTTTCTGCCTATTGAATGCAACAGCTCTTTTCATTTCTCTTGCAGTTGTTGTTGTTCAAATCACTTTGGTGGCTTGGGATACAAGGGCTCAAAGGCAGGTTGTGTCAGTGATTAATAAGCTAATGTGGGCTGCATGTGCTTGCACTTGTGGGGCATTTCTTGCTATATGCTTTGTGGTGGTTGGAGATGAAACATGGCTGGCTATAAGTGTCACCCTTTTAGGAGCACCAATTCTGCTTGGCACTCTAGCATACTTGTGCTACTTTGTTTTTAGGCGACATTTTGGATTCCGTGGAGATTCTCAGAGACTAGTCAAGAGACCAAGTGGAAGCAAATCTTTCTCATGGTCTTACTCAGTAAACATATCAGATGCGGAGGATTATGATTCTGATCATGAGAAGATATATGCTCTGTGA 1848 0.4307 MDSEKSLTEEDKEEDDNGGGICLLYKQKNTHSHMHFLCNTTPPFHHQTNKYQIILKIRVFANFSPLQNLDTPSSLRFFIQEEEYAMDSKAMTFITHQAIFNAVRCGDLQGLKEQLKNCKGEGTSEGVISELITMPNDEGETLLYIAAEIGHREVFSFLLGLCDLEVLKIRANSDMNAFHVAAKRGHLGRFFLQDILSTWPEVCKICNSSNTSALYLAAVQDHLDVVNAILDVDVSSMMIVRKNGKTALHNAARYGILRIVNALIARDSGIVCIKDKKGQTALHMAVKGQSTSVVEEILQADLTILNERDKKGNTALHMATRKVRSQIVSFLLTYTAIDVNAINNQKETALDLADKLPYGDSALEIKEALTECGAKHARHIGKVNEAMELKRAVSDIKHEVQSQLIQNEKTRRRVSSIAKELKKIHREAVQNTINSVTVVSVLFGSIAFMALFSLPGQYRKKQPEAGEANIAHDVAFSAFCLLNATALFISLAVVVVQITLVAWDTRAQRQVVSVINKLMWAACACTCGAFLAICFVVVGDETWLAISVTLLGAPILLGTLAYLCYFVFRRHFGFRGDSQRLVKRPSGSKSFSWSYSVNISDAEDYDSDHEKIYAL 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00043 615 Gene3D - 190 401 IPR036770 -
Vimu7g00043 615 ProSiteProfiles Ankyrin repeat profile. 311 344 IPR002110 GO:0005515
Vimu7g00043 615 Pfam Domain of unknown function 427 536 IPR026961 -
Vimu7g00043 615 Gene3D - 84 189 IPR036770 -
Vimu7g00043 615 ProSiteProfiles Ankyrin repeat region circular profile. 243 270 - -
Vimu7g00043 615 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 68 594 - -
Vimu7g00043 615 SUPERFAMILY Ankyrin repeat 98 358 IPR036770 -
Vimu7g00043 615 ProSiteProfiles Ankyrin repeat profile. 243 270 IPR002110 GO:0005515
Vimu7g00043 615 SMART ANK_2a 243 272 IPR002110 GO:0005515
Vimu7g00043 615 SMART ANK_2a 277 306 IPR002110 GO:0005515
Vimu7g00043 615 SMART ANK_2a 209 239 IPR002110 GO:0005515
Vimu7g00043 615 SMART ANK_2a 311 341 IPR002110 GO:0005515
Vimu7g00043 615 SMART ANK_2a 138 166 IPR002110 GO:0005515
Vimu7g00043 615 Pfam Ankyrin repeats (3 copies) 207 266 IPR002110 GO:0005515
Vimu7g00043 615 Pfam Ankyrin repeats (3 copies) 275 341 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00043 Vimu-Chr7 535228 539153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00043 86 615 Miscellaneous Gene Families AT2G01680 65.299 0.0 697
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00043 7 535228 539153 Vimu7g00043 7 535228 539153 ECH