Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00040 ATGGCCGAAGCTCTCTCGGTGATTCCGCCAGCCGTGCTTCGTAACCTCGCTGACAAGCTCTACGAGAAGCGCAAGAATGCAGCACTGGAGGTTGAGGGGATAGTGAAGCAGCTTGCTTCTGCTGGGGATCATGATAGGATAGTTGCTGTGATCAGTTTGTTGACTACTGAATTCACTTATTCGCCACAGGCAAATCACCGTAAGGGAGGGTTGATAAGCCTAGCTGCTGCCACTGTTGGGTTGACAACTGAAGCTGCTCAGCATCTCGAGCTAATTGTACCTCCTGTATTAAATTCCTTTGCCGATCAAGATAGCAGAGTTCGTTATTATGCTTGTGAAGCATTATACAACATAGCAAAGGTTGTGAGAGGAGATTTTATTATATTCTTCAACCAGATCTTTGATGCCTTATGCAAGCTTTCTGCAGACTCAGATGCCAATGTACAAAGTGCTGCACATCTCTTAGATCGACTTGTGAAGGATATCGTGACTGAAAGTGATCAGTTCAGGTGCACATCTTACTTCTGTGGTGTATGTTTTTCTGCGCGACTGTATCCTGTTGTTATTGAAGAATTTATACCATTGCTGAGGGAGCGCATGAATGTTTTGAATCCATATGTTCGTCAGTTTTTGGTTGGATGGATTACTGTCTTGGACAGTGTCCCAGATATTGACATGCTGGGCTTTCTTCCTGATTTTCTTGATGGTTTGTTTAATATGCTGAGTGATTCAAGTCATGAAATACGTCAACAGGCTGATTCAGCCCTTTCGGAGTTTCTTCAAGAGATTAAAAATTCACCAGTTTCATCTATTTGTTCACTTCTTCCTGTGTTGTACAAGTTTGCACCATTTTCACCTAATATATTGAAACAAAAGCAACATGTTTTGTTTATTTGTCATTTTCTGACTCAAGCAGTGCTACTCTTGAAGTCTGTAGATTATGGTCGGATGGCTGAAATACTGGTACAAAGGGCAGGTTCTCCAGATGAATTTACTAGGTTAACAGCTATCACGTGGATAAATGAGTTTGTTAAACTTGGTGGAGATCAGCTTGTTCCATATTATGCTGACATTCTTGGAGCCATTTTGCCGTGCATATCTGATAAAGAAGAGAAAATTAGAGTGGTTGCTCGTGAAACCAATGAAGAGCTACGTGTAATCAAGGCTGATCCAGCTGACGCATTTGATGTAGGAGCAATCCTGTCCATTGCTAGGAGGCAACTATCTAGTGAATGGGAGGCTACTCGAATTGAAGCTTTGCACTGGATGTCAACCCTTTTATCCAGACACCGTAGTGAGGTTTTGATATTTCTGAATGACATATTTGATACCCTACTCAAAGCACTTTCAGATTCTTCTGATAAGGTTGTGCTTCTAGTTCTTGATGTTCATGCATGCATTGCCAGAGATCCCCTCCATTTCCGGCAGCTTGTTGCTTTTCTAGTGCACAGTTTCCAACTAGATAATTCCCTTTTGGAGAAGCGTGGTGCTTTGATAATTCGTCGCCTTTGTGTTCTTTTGAATGCTGAGAGAGTCTACCGGGAACTTTCTGCAATATTAGAAGGAGAATCTGATTTGGACTTCGCATCAATTATGGTTCAGGCTTTGAATTTGATCTTACTTACATCATCAGAATTATCTGAGATTCGAGATCTTTTGAAGCAATCACTTGTAACTCCTTCCGGGAAGGACCTATATGATGCTCTGTATGCCTCTTGGTGTCATTCTCCAATGGCAATTATAAGTCTATGCTTTTTATCTCAGACCTACCAACATGCCAGTATTGTGATTCAGTCACTGGTGGAGGAGGATATTAATGTCAAACTTTTGGTCCAACTGGATAAATTGATCCGCTTGATGGAAACTCCTATCTTTGCCTATCTTCGATTGCAGCTTCTTGAACCTGGAAGATATATTTGGTTATTCAAGGCATTGTATGGTCTTCTGATGTTGCTTCCTCAGCAAAGTGCCGCCTTTAAGATACTAAAAACTCGTTTAAAAGCCGTGCCTTCGTATTCAAATAGTGGTGAGCAATTAAAGAGAACACCTTCTGGGGATCCCTACCAATTTCATAGCGTGCCTGATGGATTTCGAACCATTGAGGATGGTGTTGTTGTAGCCGAAGATGGTGGGAGCTCACGTAATGGAATAAATTTTGCTGCAAGGCTACAACAATTTCAGCAAATGCAGCGCCAGCACCGTGTGCTTGCCAAAACACGGGCAAAGTCACGCAATATTTCCACTTCAACGACAAAGGAGCCAAAAAGAGAGGAAGAACCAATAAGAGCGCAGTCTGTTGAACGTAATGTTCCTTCAAGATCATTTAAGAGAGGTCTAGGGAAGCTACGCTTATAA 2355 0.4195 MAEALSVIPPAVLRNLADKLYEKRKNAALEVEGIVKQLASAGDHDRIVAVISLLTTEFTYSPQANHRKGGLISLAAATVGLTTEAAQHLELIVPPVLNSFADQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFRCTSYFCGVCFSARLYPVVIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALSEFLQEIKNSPVSSICSLLPVLYKFAPFSPNILKQKQHVLFICHFLTQAVLLLKSVDYGRMAEILVQRAGSPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRVIKADPADAFDVGAILSIARRQLSSEWEATRIEALHWMSTLLSRHRSEVLIFLNDIFDTLLKALSDSSDKVVLLVLDVHACIARDPLHFRQLVAFLVHSFQLDNSLLEKRGALIIRRLCVLLNAERVYRELSAILEGESDLDFASIMVQALNLILLTSSELSEIRDLLKQSLVTPSGKDLYDALYASWCHSPMAIISLCFLSQTYQHASIVIQSLVEEDINVKLLVQLDKLIRLMETPIFAYLRLQLLEPGRYIWLFKALYGLLMLLPQQSAAFKILKTRLKAVPSYSNSGEQLKRTPSGDPYQFHSVPDGFRTIEDGVVVAEDGGSSRNGINFAARLQQFQQMQRQHRVLAKTRAKSRNISTSTTKEPKREEEPIRAQSVERNVPSRSFKRGLGKLRL 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00040 784 FunFam protein VAC14 homolog isoform X1 309 471 - -
Vimu7g00040 784 Pfam Vacuolar 14 Fab1-binding region 65 161 - -
Vimu7g00040 784 Pfam Vacuolar protein 14 C-terminal Fig4p binding 490 669 IPR021841 -
Vimu7g00040 784 ProSiteProfiles HEAT repeat profile. 92 127 IPR021133 -
Vimu7g00040 784 FunFam ARM repeat superfamily protein 6 125 - -
Vimu7g00040 784 MobiDBLite consensus disorder prediction 749 764 - -
Vimu7g00040 784 FunFam protein VAC14 homolog 126 267 - -
Vimu7g00040 784 Gene3D - 2 280 IPR011989 -
Vimu7g00040 784 MobiDBLite consensus disorder prediction 736 784 - -
Vimu7g00040 784 SUPERFAMILY ARM repeat 3 603 IPR016024 -
Vimu7g00040 784 PANTHER TAX1 BINDING PROTEIN-RELATED 7 747 IPR026825 GO:0006661|GO:0070772
Vimu7g00040 784 Gene3D - 284 472 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00040 Vimu-Chr7 505506 522347 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00040 7 505506 522347 Vimu7g00040 7 505506 522347 ECH