Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01878 ATGAAACAAGACTTTGATCTTGAAGTGGTGGCCTCAGCTGAATATGAATCTGAAGTTAGCAGCCAGGTTGCTTCCAACATATCTATTCAAGAAACCTGTGCAGGTCCTTGCAGTGACAACCTCATCAACTCTCCCCATGTCACAAAACCAGTAGAATTTCATCTCCATTCAGATGCTATCTCCCTTGACTTAACTCTCAACTTCAACAACAATGACTTGGTGGTTACAGATTCAACAGGACTCTCATTCTCAAGCACTACTAGCGAGAGCAACAACGATCCTCCCTCTCAGAGTACTCCCTCTAAAACCATGCCACGGGTCTTCTCTTGCAATTACTGTAACCGCAAGTTTTTGAGCTCTCAGGCTCTTGGAGGCCACCAAAATGCACACAAGAGAGAAAGAATATTAGCAAAGAGAGCCTTGCGCATGGGGTTTTTCTCTGAGAGGTATGTCAGTCTTGCATCTCTCCCTCTTCATGGTTCTTTCAGGTCCTTAGGGATAAAGGCACATTCTTCACTGCACCACGGCTTTTCACCAACAATGAGACCGCCTGAGACGAAAAGCAGTGCAAGATTTGAGCAAGGATATGTTGGTTTTCCAATATTCTTGGAGGAGGATGAGGCAGAACTCTTGTGGCAAGGTAGTTACCATCAGGTTCCCTCTAATGGAGGCCATACTCATCAGAATTTCACACTGAGTGGAACCTCTAATTTGAGTTTTAATGGGGTGAATCAGCCACCGGTTGACATAGAGAACTCAGCACCTGAGTTGACATTGAAACTTTGA 786 0.4478 MKQDFDLEVVASAEYESEVSSQVASNISIQETCAGPCSDNLINSPHVTKPVEFHLHSDAISLDLTLNFNNNDLVVTDSTGLSFSSTTSESNNDPPSQSTPSKTMPRVFSCNYCNRKFLSSQALGGHQNAHKRERILAKRALRMGFFSERYVSLASLPLHGSFRSLGIKAHSSLHHGFSPTMRPPETKSSARFEQGYVGFPIFLEEDEAELLWQGSYHQVPSNGGHTHQNFTLSGTSNLSFNGVNQPPVDIENSAPELTLKL 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01878 261 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 56 194 IPR044246 GO:0009788
Vimu6g01878 261 SUPERFAMILY beta-beta-alpha zinc fingers 106 135 IPR036236 -
Vimu6g01878 261 MobiDBLite consensus disorder prediction 83 103 - -
Vimu6g01878 261 ProSitePatterns Zinc finger C2H2 type domain signature. 110 130 IPR013087 -
Vimu6g01878 261 Gene3D Classic Zinc Finger 84 149 - -
Vimu6g01878 261 ProSiteProfiles Zinc finger C2H2 type domain profile. 108 135 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01878 Vimu-Chr6 17002160 17005383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01878 106 261 C2H2 Transcription Factor Family AT1G66140 51.381 6.32e-45 150
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01878 6 17002160 17005383 Vimu6g01878 6 17002160 17005383 ECH
Vimu6g01878 6 17002160 17005383 Vimu1g01144 1 8744124 8744897 PCT