Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01463 ATGCCTCCTTCCAACACATTCCTTCACATCAAAACACCAAGCAAAACCTCTTCTTCCTCTTTCTCCATCATGGCTTCTTCAACTTGTATTAACTTTTACGCCCTTCTGCTAGGGGTGGTGGCTACCTCCATGGTGGCTAAATGTGCTGCTAACTTCTACCAAGACTTTGATCTCACATGGGGTGACCACCGTGCTAAGATATTCGGCGGCGGTCAGCTTCTATCTCTTTCGCTCGACAAAGTCTCTGGCTCTGGCTTCCAATCCAAGAAAGAGTACTTATTTGGGAGGATCGATATGCAGCTCAAACTCGTCGCTGGCAACTCTGCCGGCACTGTCACTGCTTACTACTTGTCATCTCAGGGACCAACCCATGACGAGATTGATTTTGAATTCTTGGGAAACGTGAGCGGCGACCCCTACATTCTCCACACAAACGTGTTTACCCAAGGCAAAGGAAACAGAGAGCAACAGTTCTACCTTTGGTTCGACCCCACCAGAAACTTCCACACTTACTCCATCATCTGGAAGCCCCAACACATCATCTTCTTGGTGGACAACATTCCCATAAGGGTGTTCAAGAATGCTGAGAGTGCCGGTGTTCCTTTCCCGAAGAACCAACCCATGAGAATCTATTCTAGCCTGTGGAATGCCGATGACTGGGCAACCAGAGGTGGCTTGGTGAAAACTGATTGGTCGAAGGCACCATTTACAGCCTACTACCGCAACTTCAAAGCCACAGAGTTCTCGGTGTCTTCCAATTCATTCTCTGATGCTGCATGGCAGAGCACGGAGCTTGACGCCTATGGCAGAAGAAGACTTAGATGGGTTCAAAAGTACTTCATGATCTATAACTACTGCAACGACCTTAAGCGATTCCCACAAGGCCTTCCTGCTGAGTGCAAGCGCTGA 909 0.4851 MPPSNTFLHIKTPSKTSSSSFSIMASSTCINFYALLLGVVATSMVAKCAANFYQDFDLTWGDHRAKIFGGGQLLSLSLDKVSGSGFQSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGDPYILHTNVFTQGKGNREQQFYLWFDPTRNFHTYSIIWKPQHIIFLVDNIPIRVFKNAESAGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRNFKATEFSVSSNSFSDAAWQSTELDAYGRRRLRWVQKYFMIYNYCNDLKRFPQGLPAECKR 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01463 302 PIRSF EndGlu_transf 15 302 IPR016455 GO:0010411|GO:0016762|GO:0042546
Vimu6g01463 302 CDD GH16_XET 49 300 IPR016455 GO:0010411|GO:0016762|GO:0042546
Vimu6g01463 302 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 5 240 IPR000757 GO:0004553|GO:0005975
Vimu6g01463 302 SUPERFAMILY Concanavalin A-like lectins/glucanases 52 301 IPR013320 -
Vimu6g01463 302 FunFam Xyloglucan endotransglucosylase/hydrolase 39 302 - -
Vimu6g01463 302 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 47 300 IPR044791 GO:0004553
Vimu6g01463 302 Gene3D - 38 302 - -
Vimu6g01463 302 ProSitePatterns Glycosyl hydrolases family 16 active sites. 126 136 IPR008263 GO:0004553|GO:0005975
Vimu6g01463 302 Pfam Glycosyl hydrolases family 16 53 233 IPR000757 GO:0004553|GO:0005975
Vimu6g01463 302 PRINTS Glycosyl hydrolase family 16 signature 142 155 IPR008264 GO:0004553|GO:0005975
Vimu6g01463 302 PRINTS Glycosyl hydrolase family 16 signature 160 177 IPR008264 GO:0004553|GO:0005975
Vimu6g01463 302 PRINTS Glycosyl hydrolase family 16 signature 84 102 IPR008264 GO:0004553|GO:0005975
Vimu6g01463 302 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 258 300 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01463 Vimu-Chr6 14017155 14018478 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01463 36 302 Glycoside Hydrolase AT4G14130 76.429 1.40e-161 449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01463 6 14017155 14018478 Vimu6g01463 6 14017155 14018478 ECH