Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02103 ATGGAGCCCAACTTTCCCGGAGATTATCTGTTTGATGAATCGGAGAGCATATCACACCTATCAGAATCACTTGGTTTTGCTAGAATGGATCCTCCACCGGAAGACAACGACTTCTCAGAAACCGTCAAGTTCATAAGCCAGATCCTCATGGAAGAGAACGTTCAGCTACAGAATCCATTCTATGATTCACTCACCTTGCAGGTTACCGAGAAGTCCTTCTACGATACTCTAGTGGGTAACCTTTCCCCTAATCAACACGCCCTTGTTCTCAGCCCCCAAGGTGAAACCACCACCACCACCACCAATAACAACTACAGCAGCTTTTTCGATGAACATTTCCCTTCCCCGGATTCTGTTTCTGCTTGTGCTTCTGCTCTTCAGTATAACCCCCACACCCTTTCTCAGCCACCTTCATTTACTGTTAGTCATGGATTCTCAGATTTGGATTCTTCTATCGCCAAACTCTTGGCACAGAATATGTTCAATGATACTGATTCTGTTTCCCAGTTCAGGAGAGGAATAGAGGAAGCTACCAAGCTTCTTCCTTCTGGCCCTGAGCTTGTAACTGGTCTCCATTCAAACGGTGAAGAACAGATCAATAAGTTTGGAGTTAATTCCCAGAGCAGAAAGAATCACGAGCGTCTAGAAAGAGATACCACAGAAGAAGAAGGAAGAAGTAGTAAGCAATCGGCACTTAGCCTTGTTGATGAGATTGACATTTCAGATGCTATAGATCGGGTGTTTCTGAGTGTGGAAAACGTCGGTAGTGAACACAATTCCTTGCAGAGTGAATCAGTGAAAGGTGAGGAGCTAGATGGAGGGAAGGACCGATCAAAGAAAAGAGGGAGGAAGAAGGAAACTGTGGATTTGAGGAATCTTCTACTGATGTGTGCACAATCTGTGTATGCCAATGACATTAGAGCTGCCACCGAATTACTAAAGCAAATTCGGCAACACTCTTCTCCCTTTGGAGATGCATCGCAGAGGGTAGCTCACTACTTCGCCAATGGTCTTGATGCACGCTTGGTTGGGGCTGGTTCTGGCGGTCATGAACAATTTTCTTTTCTGAACTCTCAGAGGATTACTGCTGCAGAGTACCTGAAGGCATATCAAGTGTTTCTATCTTCCACCCCTTTCAAAAAGTTTACATATTTCTTTGCAAACACAATGATTATGGAAGCTGCTGCAAAATCAGAAACCGTCCATATCATTGATTTTGGCATCCTGTATGGTTTCCAGTGGCCAATTCTTATTAAGTTTTTATCAAACAGAGAGGGTGGTCCTCCCAAGCTGAGGATCACAGGGATAGAGTTTCCTCAACCAGGCTTTCGTCCCTCTGAAAGGATTGAGGAGACGGGTCACCGTCTTGCTAACTATTGTAAGCGTTACAATGTTCCTTTTGAATACCATGCCATAGCATCAAGGAACTGGGAAACTATTCAGGTTGAAGCCCTTAAAATTGAGAGCAATGAGATAGTTGCCGTCAACTGTCACATGAGGTTTGAACATTTACTGGATGAGAGCACTGTTGAAGTGAACAGTCCTAGAAATGCAGTCCTGCATTTGATCAGGAAGATAAATCCGGATATCTTTACTCAGATCATTGTTAATGGATCATATAGTTCCCCTTTCTTTACCACACGGTTTAAGGAGGCACTGTTCCATTTTTCTGCTGTTTATGATCTGTTTGACACTGTCATACCTCGTGAAAACGATTGGAGAATGACGATTGAGAGAGAGCTTTTGGGTAGGGAGGCTATGAATGTTATAGCATGTGAAGGTTCTGACAGGGTTCAGAGACCTGAGACATACAAACAATGGCAAGTTAGGAATACAAGGGCTGGTTTCAAGCAGCTCCCATTGAAGGAGGAATTGATGGCCAAATTTAGGACTAAGTTAAAGGAATATCACAGAGATTTTGTCTTCGCTGAAGATAACAATTGGATGATTCAAGGTTGGAAGGGCCGCATTTTTAATGCTTCCACTTGTTGGGTGCCCACATAA 2004 0.4361 MEPNFPGDYLFDESESISHLSESLGFARMDPPPEDNDFSETVKFISQILMEENVQLQNPFYDSLTLQVTEKSFYDTLVGNLSPNQHALVLSPQGETTTTTTNNNYSSFFDEHFPSPDSVSACASALQYNPHTLSQPPSFTVSHGFSDLDSSIAKLLAQNMFNDTDSVSQFRRGIEEATKLLPSGPELVTGLHSNGEEQINKFGVNSQSRKNHERLERDTTEEEGRSSKQSALSLVDEIDISDAIDRVFLSVENVGSEHNSLQSESVKGEELDGGKDRSKKRGRKKETVDLRNLLLMCAQSVYANDIRAATELLKQIRQHSSPFGDASQRVAHYFANGLDARLVGAGSGGHEQFSFLNSQRITAAEYLKAYQVFLSSTPFKKFTYFFANTMIMEAAAKSETVHIIDFGILYGFQWPILIKFLSNREGGPPKLRITGIEFPQPGFRPSERIEETGHRLANYCKRYNVPFEYHAIASRNWETIQVEALKIESNEIVAVNCHMRFEHLLDESTVEVNSPRNAVLHLIRKINPDIFTQIIVNGSYSSPFFTTRFKEALFHFSAVYDLFDTVIPRENDWRMTIERELLGREAMNVIACEGSDRVQRPETYKQWQVRNTRAGFKQLPLKEELMAKFRTKLKEYHRDFVFAEDNNWMIQGWKGRIFNASTCWVPT 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02103 667 MobiDBLite consensus disorder prediction 207 225 - -
Vimu5g02103 667 MobiDBLite consensus disorder prediction 258 284 - -
Vimu5g02103 667 Pfam GRAS domain family 290 664 IPR005202 -
Vimu5g02103 667 MobiDBLite consensus disorder prediction 263 284 - -
Vimu5g02103 667 ProSiteProfiles GRAS family profile. 281 665 IPR005202 -
Vimu5g02103 667 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 226 654 IPR005202 -
Vimu5g02103 667 MobiDBLite consensus disorder prediction 199 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02103 Vimu-Chr5 32698799 32700802 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02103 41 667 GRAS Transcription Factor Family AT1G07530 43.948 4.84e-180 529
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vimu5g02103 GRAS 3e-113 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02103 5 32698799 32700802 Vimu5g02103 5 32698799 32700802 ECH
Vimu5g02103 5 32698799 32700802 Vimu4g00496 4 3603608 3605770 PCT