Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02102 ATGGAGCATCCAAACTTCTTCTTCGGTGAAGAAGAGGATGGCATGGCCCATCTCACAGACCCGCTTGCTTTTCCGACTTTGGATCTTTCTTCCAGAGACCCTTCGCTGGAAGACGACTTCTCAGAAACTGCAAAGTTCATCAGCCAGATCCTCATGGAAGAGAACGTCGAACACAAGCCATTCTACGACTCACTCACCTTGCAAGTTACCGAGAAATCTTTCTACGACGCTCTCGCCGGTAACCTACCTCCTTCCCCCAATCAACACCCCCTTGCTTTCAGTCCTGAAGCTGAAACCACCACCACCACCACCACCACCACCGCCAGCACCAGCATCAGCAGCAACAGCAGTAACAACAATTTTTCAGATGAAAATTCCAGTGAGTTGAAGCTTCCTTCTCCAGATTCTGTTTTTAAGTTTAACTCCCGCGCCCTTTCTCAACCGTCTCCGTCAATTACCGCCAACCATGGACTCCAAGATTTGGATTTTTCTATTGCCAAACTCTTATCACAGAATATTTTCAATGATGTTGACTCCGTTTCCCAGTTTAGGCGGGGCCTGGAGGAAGCTAGCAAGTTTCTTCCTCCGGGACCTAACCTTGTGACTGGTCTAGGTTCAAACGGAGAACAAGCGTTCAATAAGTTTGGAGATACTTCGTATGGGTTGAGCGGGAAAAATCACAAGAGGGACGAGAGATACGCTATAGAGGAAGAAGAAGAAGAAGAAGGGAGAAGTAACAAGCAGACAGCACTTTCCCATGTCGATGAGAGTGACTTGTCTGATGCTTTCGATCGGGTGTTGCTTCATGAGGGAAACATGTGTAGCGAAATCAATTCTTTGCCAGGTGGAGCAGTGAAGGTTGATGAAGCAGATGGAGGGAAGAGTCGTTCAAGGAAAAAAGGGGGGAACAAGGAAACAGTTGATTTGAGGAATCTTTTGCTGATGTGCTCACAATCTGTGTATGCCAATGACAACAGGACGGCCAATGAATTGCTAAAGCAGATTAGGCAACACTCTTCTCCCTTTGGAGATGCATCACAGAGGTTGGCTCATTACTTTGCCAACGGCCTTGAGGCACGCTTGGTTGGGGATGGTACAGTTGCACAGGGCATGTATTCTTTTCTGACCTCTAAGAGGAGCTCTGCTGCTGAGTTTCTCAAGGCATACCAGGTTTTCCTTTCCGCTTCTCCTTTCAAGAAGTTTACATATTTCTTTGCGAATAAAATGATTATGAAAGCAGCTGCAAAGGCAGAAACCATCCATATTATTGATTTTGGCATCCTATATGGTTTCCACTGGCCAATTCTTATTAAGTTTTTATCAGATAGAGAGGGTGGTCCTCCCAAGCTGAGGATCACAGGGATAGAGTTTCCCCAACCAGGCTTTCGTCCCTCTGAAAGGATTGAGGAGACGGGTCACCGTCTTGCTAACTATTGTAAGCGTTACAATGTTCCCTTTGAATACCATGCCATAGCATCAAGGAACTGGGAAACTATTCAGGTTGAAGCCCTTAAAATTGAGAGCAATGAGTTTGTTGCTGTCAATTGTCATATGAGGTTTGAGAATTTACTGGATGAGTCTATTGAAGTGGACAGTCCTAGAAATGCAGTCTTGCATTTGATCAGGAAGATAAATCCAAATATTTTTACTCAGTCCATCACTAATGGATCATATAATGCCCCCTTCTTTGCCACAAGGTTTAGGGAGGCTTTGTTTCATTATTCTGCTATTTATGATATGTGTGACACTGTCATGCCTCGAGAAAACGAATGGAGGTTGATGATTGAGAGAGAGCTTTTGGGCCGGGAGGCTATGAATGTTATAGCATGCGAAGGTTCTGAGAGAATTGAAAGGCCCGAGACATACAAACAGTGGCAGGCTAGGAATACAAGGGCTGGCTTCAAGCAGCTCCCACTGAATCCGGAATTGATGACCAAGTTTAGGACCAAGTTAAAGGAATGGTACCACAGAGATTTTGTCTTTGATGAAGATAACAATTGGATGCTTCAAGGTTGGAAGGGCCGCATTTTGTATGCTTCCACTTGTTGGGTTGTTGTGATGGTCAAGCTTATTTTTGCTCGTTACACTGTTTCAGGTTCTGGTACCTACTTGCTTCACCTTCAGCTACTGAATAGACATGATGTAACAGATGACAATGTTCGGTTTGTTTTTCCGGTGATGCTTGCAATTTTGATTTGTTGCAGTAACTTGTGGGAAAGTCATAATTTCCAGCGATAG 2238 0.4468 MEHPNFFFGEEEDGMAHLTDPLAFPTLDLSSRDPSLEDDFSETAKFISQILMEENVEHKPFYDSLTLQVTEKSFYDALAGNLPPSPNQHPLAFSPEAETTTTTTTTTASTSISSNSSNNNFSDENSSELKLPSPDSVFKFNSRALSQPSPSITANHGLQDLDFSIAKLLSQNIFNDVDSVSQFRRGLEEASKFLPPGPNLVTGLGSNGEQAFNKFGDTSYGLSGKNHKRDERYAIEEEEEEEGRSNKQTALSHVDESDLSDAFDRVLLHEGNMCSEINSLPGGAVKVDEADGGKSRSRKKGGNKETVDLRNLLLMCSQSVYANDNRTANELLKQIRQHSSPFGDASQRLAHYFANGLEARLVGDGTVAQGMYSFLTSKRSSAAEFLKAYQVFLSASPFKKFTYFFANKMIMKAAAKAETIHIIDFGILYGFHWPILIKFLSDREGGPPKLRITGIEFPQPGFRPSERIEETGHRLANYCKRYNVPFEYHAIASRNWETIQVEALKIESNEFVAVNCHMRFENLLDESIEVDSPRNAVLHLIRKINPNIFTQSITNGSYNAPFFATRFREALFHYSAIYDMCDTVMPRENEWRLMIERELLGREAMNVIACEGSERIERPETYKQWQARNTRAGFKQLPLNPELMTKFRTKLKEWYHRDFVFDEDNNWMLQGWKGRILYASTCWVVVMVKLIFARYTVSGSGTYLLHLQLLNRHDVTDDNVRFVFPVMLAILICCSNLWESHNFQR 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02102 745 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 238 679 IPR005202 -
Vimu5g02102 745 Pfam GRAS domain family 309 683 IPR005202 -
Vimu5g02102 745 MobiDBLite consensus disorder prediction 281 303 - -
Vimu5g02102 745 MobiDBLite consensus disorder prediction 92 130 - -
Vimu5g02102 745 MobiDBLite consensus disorder prediction 85 130 - -
Vimu5g02102 745 ProSiteProfiles GRAS family profile. 300 684 IPR005202 -
Vimu5g02102 745 MobiDBLite consensus disorder prediction 235 251 - -
Vimu5g02102 745 MobiDBLite consensus disorder prediction 235 256 - -
Vimu5g02102 745 MobiDBLite consensus disorder prediction 289 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02102 Vimu-Chr5 32693423 32696097 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02102 45 684 GRAS Transcription Factor Family AT1G07530 49.420 0.0 605
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vimu5g02102 GRAS 6.5e-116 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00496 4 3603608 3605770 Vimu5g02102 5 32693423 32696097 PCT
Vimu5g02102 5 32693423 32696097 Vimu4g00497 4 3611069 3613102 PCT